| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is btuB [H]
Identifier: 182681815
GI number: 182681815
Start: 1408234
End: 1410600
Strand: Direct
Name: btuB [H]
Synonym: XfasM23_1279
Alternate gene names: 182681815
Gene position: 1408234-1410600 (Clockwise)
Preceding gene: 182681813
Following gene: 182681816
Centisome position: 55.54
GC content: 52.22
Gene sequence:
>2367_bases ATGAAGAACAGGTCCTGCTCCCTTGCGCTTATCATCACGATCGCTCTGATTTGCACCATCTCTCCACTACAGGCACAGAG CACCTCAAACAAAACTCTGGATACTCTCATCGTCACTGGTACACGCATTAGCGACCGTACTGCCGCGGAATCATCCTCAC CAATTGACATTATTTCCCAAGAATCACTGGAAGCCACGGGAACAACAGAATTAGCCACTGCGCTGTCTCGCATGGTGCCA TCGCTCAACTTTCCTCGTCCGGCAGTCAGCGACGGCAACGATGCAGTACGCCCAGCACAACTGCGCGGCTTGTCTCCAGA CCAAGTCCTGGTGTTGGTCAACGGCAAGCGTTATCACACCACTGCGCTGGTTAATCTCAATGAGATCCAGGGTCGCGGCT CAGCACCTGCTGATCTCAACACGATTCCCATTGCTGCAATCGAACGTATCGAAGTACTGAGGGATGGTGCATCAGCACAG TACGGTTCAGATGCAATTGCCGGTGTCATTAACATCGTTCTCAAGGGGGCTGGTAAAGGGGGCAGCATTACGGGTCACTA TGGTGAATACAAAGTCAAGGATGGGAAGCAATATGAGTTATCCGGGGACACGGGATTGAGTTTCGCAGGCACCGGAAAAG TTCACTTTGCTGCTCAAGGCGGTCACGAGGACCAGACCAATCGCGCCGTACCCTATAACGACGGCATCATCAGGCAACGC TACGGTGACCCGAAGATCAATCAAGGGGCGTTTTCGTACAACGGCAGTTACAGCCCGACAGAAGGTGTGACCTTCTATTC ATTCGGTATGGTGAGCCGCCGTAAGGTGCTATCCAATGGCTTCTACCGTTGGGCCGACGATGCACGCAACCGACCGGAAA TCTATCCAGAAGGTTTTCTGCCGCAAATCTACAACGTTGCCAATGACACGTCCTGGGTGAGCGGTATGAAAGCATCGACT GCATGGGGACTCAACATCGACCTAAGCTACAATTATGGCAACAATCAGCTGACTTTCGATGTCAGAAACAGTCTCAATAA CAGTCTGGGGCTGAGCAGTCCCACTGCATTCTATGCCGGCGGTCTAGAGATCACGCAGCATGTACTCAACGCAGACTTCA ATAAGTCGGTGGATTGGGGACATCTGGCATATCCGCTGAACTTGGCATTCGGCGTGGAATGGCGTGGTGAAATATTCAAT GAATATCAAGGAGAGGAAGCTTCCTATATAAACGGCGGAGTGCGTTCCAGTGCCGGTACGCTCTTACCAGGAGCACAAGT ATTTTCTGGCTTCAAGCCATCCGATTCCGGCGGTTTTGATCGTAACAGCCATTCGATGTACATCGATCTGGAAGGCAATT TGACGGAGAAATTCTCTGCTGGAGTTGCCGGACGCTACGAACACTACAGTGACTTCAGCAACACCAGGACAGGCAAAGTG TCACTGCGTTACGCCTTCACTCCCCAAGTCGCGGTACGCGCCACCACGTCCAACGGCTTCCGTGCACCCTCTCTGCAACA GCAGTTTTTCCAATCAATCGCTACCGACTTTATCGCAGGTATACCTTACGAAATCGGCACTTTCCGCACTGACAACGCGG CCGCAGTCGCGCTGGGTGCGGAACCATTAAAAGCTGAGAAGTCCAAAAACTATAGTCTGGGTTTGGTCGTGCAACCAGTC GATGATCTGCATGTGACAATTGATGCGTACCGTATCAATATTGATGACCGTATCGTCCTTTCTGAAAATCTAACTTCAAC CGCAGTACGTCATTACCTGCAAGCAAACGGCTACGCCGGCATCGGCGGCGGGCGCTATTTCACCAACGGGGTTGACACTA AGACAACTGGCCTGGATGCAATCAGTAGCTACCATTGGGCGCTGAGCAACAGCACGATGGATTTCACGCTTGGTTATAAC TACAACAAAACAGAGGTCAAGCGCGTCGCCGACAACCCAGCACGGTTAACAGCGATCGACCCAAGTGCCGTACGCATTAG CCAAGCTGAGCTGACTCGCATCACCAGCGGGGCACCTCGCGACAAGGCGTTCCTCAGTGGAGTGTGGAACATCGGCCACT GGTCGTTTACCGCCACAGGCACACGCTGGGGTGAGTTCACGGTCTACAACACACCAACGGCTGTGCCCGTGCAACAGAGG TTTGCTCCAAAATGGACACTGGATCTAGCGATGTCTTACAAGTTGCAGCACTGGAATTTCACGATAGGTGGGGACAATGT CACCAACACCTATCCAGAACGCGATCTCATCGGGCAAGGAACACAGGCCTATTTACCGTATAGCAGATCTTCACCTTTTG GCTTCAACGGAGCATTTGCCTACGCCAACATCAGCTACAACTGGTAA
Upstream 100 bases:
>100_bases AATTTGACATTTAATAATTATTCGCGTTAATCGTTAGTAACGCATCCACTATGGCGCTTTTTTCCTTCTCATTTATCTCA CAGCTGGAGTCGCCGCTATT
Downstream 100 bases:
>100_bases ATCCAGTTCCTGGGCCGATGCCTAACGTCGGCCCAGGAACATTGAGTATGAGTTTGGAATAATGGAAGTCTCCAAACGCT AGTTAACACACATAGCGTTG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MKNRSCSLALIITIALICTISPLQAQSTSNKTLDTLIVTGTRISDRTAAESSSPIDIISQESLEATGTTELATALSRMVP SLNFPRPAVSDGNDAVRPAQLRGLSPDQVLVLVNGKRYHTTALVNLNEIQGRGSAPADLNTIPIAAIERIEVLRDGASAQ YGSDAIAGVINIVLKGAGKGGSITGHYGEYKVKDGKQYELSGDTGLSFAGTGKVHFAAQGGHEDQTNRAVPYNDGIIRQR YGDPKINQGAFSYNGSYSPTEGVTFYSFGMVSRRKVLSNGFYRWADDARNRPEIYPEGFLPQIYNVANDTSWVSGMKAST AWGLNIDLSYNYGNNQLTFDVRNSLNNSLGLSSPTAFYAGGLEITQHVLNADFNKSVDWGHLAYPLNLAFGVEWRGEIFN EYQGEEASYINGGVRSSAGTLLPGAQVFSGFKPSDSGGFDRNSHSMYIDLEGNLTEKFSAGVAGRYEHYSDFSNTRTGKV SLRYAFTPQVAVRATTSNGFRAPSLQQQFFQSIATDFIAGIPYEIGTFRTDNAAAVALGAEPLKAEKSKNYSLGLVVQPV DDLHVTIDAYRINIDDRIVLSENLTSTAVRHYLQANGYAGIGGGRYFTNGVDTKTTGLDAISSYHWALSNSTMDFTLGYN YNKTEVKRVADNPARLTAIDPSAVRISQAELTRITSGAPRDKAFLSGVWNIGHWSFTATGTRWGEFTVYNTPTAVPVQQR FAPKWTLDLAMSYKLQHWNFTIGGDNVTNTYPERDLIGQGTQAYLPYSRSSPFGFNGAFAYANISYNW
Sequences:
>Translated_788_residues MKNRSCSLALIITIALICTISPLQAQSTSNKTLDTLIVTGTRISDRTAAESSSPIDIISQESLEATGTTELATALSRMVP SLNFPRPAVSDGNDAVRPAQLRGLSPDQVLVLVNGKRYHTTALVNLNEIQGRGSAPADLNTIPIAAIERIEVLRDGASAQ YGSDAIAGVINIVLKGAGKGGSITGHYGEYKVKDGKQYELSGDTGLSFAGTGKVHFAAQGGHEDQTNRAVPYNDGIIRQR YGDPKINQGAFSYNGSYSPTEGVTFYSFGMVSRRKVLSNGFYRWADDARNRPEIYPEGFLPQIYNVANDTSWVSGMKAST AWGLNIDLSYNYGNNQLTFDVRNSLNNSLGLSSPTAFYAGGLEITQHVLNADFNKSVDWGHLAYPLNLAFGVEWRGEIFN EYQGEEASYINGGVRSSAGTLLPGAQVFSGFKPSDSGGFDRNSHSMYIDLEGNLTEKFSAGVAGRYEHYSDFSNTRTGKV SLRYAFTPQVAVRATTSNGFRAPSLQQQFFQSIATDFIAGIPYEIGTFRTDNAAAVALGAEPLKAEKSKNYSLGLVVQPV DDLHVTIDAYRINIDDRIVLSENLTSTAVRHYLQANGYAGIGGGRYFTNGVDTKTTGLDAISSYHWALSNSTMDFTLGYN YNKTEVKRVADNPARLTAIDPSAVRISQAELTRITSGAPRDKAFLSGVWNIGHWSFTATGTRWGEFTVYNTPTAVPVQQR FAPKWTLDLAMSYKLQHWNFTIGGDNVTNTYPERDLIGQGTQAYLPYSRSSPFGFNGAFAYANISYNW >Mature_788_residues MKNRSCSLALIITIALICTISPLQAQSTSNKTLDTLIVTGTRISDRTAAESSSPIDIISQESLEATGTTELATALSRMVP SLNFPRPAVSDGNDAVRPAQLRGLSPDQVLVLVNGKRYHTTALVNLNEIQGRGSAPADLNTIPIAAIERIEVLRDGASAQ YGSDAIAGVINIVLKGAGKGGSITGHYGEYKVKDGKQYELSGDTGLSFAGTGKVHFAAQGGHEDQTNRAVPYNDGIIRQR YGDPKINQGAFSYNGSYSPTEGVTFYSFGMVSRRKVLSNGFYRWADDARNRPEIYPEGFLPQIYNVANDTSWVSGMKAST AWGLNIDLSYNYGNNQLTFDVRNSLNNSLGLSSPTAFYAGGLEITQHVLNADFNKSVDWGHLAYPLNLAFGVEWRGEIFN EYQGEEASYINGGVRSSAGTLLPGAQVFSGFKPSDSGGFDRNSHSMYIDLEGNLTEKFSAGVAGRYEHYSDFSNTRTGKV SLRYAFTPQVAVRATTSNGFRAPSLQQQFFQSIATDFIAGIPYEIGTFRTDNAAAVALGAEPLKAEKSKNYSLGLVVQPV DDLHVTIDAYRINIDDRIVLSENLTSTAVRHYLQANGYAGIGGGRYFTNGVDTKTTGLDAISSYHWALSNSTMDFTLGYN YNKTEVKRVADNPARLTAIDPSAVRISQAELTRITSGAPRDKAFLSGVWNIGHWSFTATGTRWGEFTVYNTPTAVPVQQR FAPKWTLDLAMSYKLQHWNFTIGGDNVTNTYPERDLIGQGTQAYLPYSRSSPFGFNGAFAYANISYNW
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=154, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=9e-15, Organism=Escherichia coli, GI1790405, Length=171, Percent_Identity=28.6549707602339, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786798, Length=588, Percent_Identity=22.108843537415, Blast_Score=70, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85766; Mature: 85766
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNRSCSLALIITIALICTISPLQAQSTSNKTLDTLIVTGTRISDRTAAESSSPIDIISQ CCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEC ESLEATGTTELATALSRMVPSLNFPRPAVSDGNDAVRPAQLRGLSPDQVLVLVNGKRYHT CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCEEEE TALVNLNEIQGRGSAPADLNTIPIAAIERIEVLRDGASAQYGSDAIAGVINIVLKGAGKG EEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCCC GSITGHYGEYKVKDGKQYELSGDTGLSFAGTGKVHFAAQGGHEDQTNRAVPYNDGIIRQR CCEECCCCCEEECCCCEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEC YGDPKINQGAFSYNGSYSPTEGVTFYSFGMVSRRKVLSNGFYRWADDARNRPEIYPEGFL CCCCCCCCCEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC PQIYNVANDTSWVSGMKASTAWGLNIDLSYNYGNNQLTFDVRNSLNNSLGLSSPTAFYAG HHHHHCCCCCHHHCCCCCCEEEEEEEEEEEECCCCEEEEEEHHCCCCCCCCCCCCEEEEC GLEITQHVLNADFNKSVDWGHLAYPLNLAFGVEWRGEIFNEYQGEEASYINGGVRSSAGT CHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECEECHHHHHHCCCCCCCEECCCCCCCCCC LLPGAQVFSGFKPSDSGGFDRNSHSMYIDLEGNLTEKFSAGVAGRYEHYSDFSNTRTGKV CCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCEE SLRYAFTPQVAVRATTSNGFRAPSLQQQFFQSIATDFIAGIPYEIGTFRTDNAAAVALGA EEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCEECCCCEEEEECC EPLKAEKSKNYSLGLVVQPVDDLHVTIDAYRINIDDRIVLSENLTSTAVRHYLQANGYAG CCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCEEE IGGGRYFTNGVDTKTTGLDAISSYHWALSNSTMDFTLGYNYNKTEVKRVADNPARLTAID CCCCCEECCCCCCCCCCHHHHHHEEEEECCCEEEEEEECCCCHHHHHHHCCCCCEEEEEC PSAVRISQAELTRITSGAPRDKAFLSGVWNIGHWSFTATGTRWGEFTVYNTPTAVPVQQR CCCEEEEHHHHHHHCCCCCCCHHHHHHEEECCCEEEEECCCCCCEEEEECCCCCCCHHHH FAPKWTLDLAMSYKLQHWNFTIGGDNVTNTYPERDLIGQGTQAYLPYSRSSPFGFNGAFA CCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCEEE YANISYNW EEEEEECC >Mature Secondary Structure MKNRSCSLALIITIALICTISPLQAQSTSNKTLDTLIVTGTRISDRTAAESSSPIDIISQ CCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEC ESLEATGTTELATALSRMVPSLNFPRPAVSDGNDAVRPAQLRGLSPDQVLVLVNGKRYHT CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCEEEE TALVNLNEIQGRGSAPADLNTIPIAAIERIEVLRDGASAQYGSDAIAGVINIVLKGAGKG EEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCCC GSITGHYGEYKVKDGKQYELSGDTGLSFAGTGKVHFAAQGGHEDQTNRAVPYNDGIIRQR CCEECCCCCEEECCCCEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEC YGDPKINQGAFSYNGSYSPTEGVTFYSFGMVSRRKVLSNGFYRWADDARNRPEIYPEGFL CCCCCCCCCEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC PQIYNVANDTSWVSGMKASTAWGLNIDLSYNYGNNQLTFDVRNSLNNSLGLSSPTAFYAG HHHHHCCCCCHHHCCCCCCEEEEEEEEEEEECCCCEEEEEEHHCCCCCCCCCCCCEEEEC GLEITQHVLNADFNKSVDWGHLAYPLNLAFGVEWRGEIFNEYQGEEASYINGGVRSSAGT CHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECEECHHHHHHCCCCCCCEECCCCCCCCCC LLPGAQVFSGFKPSDSGGFDRNSHSMYIDLEGNLTEKFSAGVAGRYEHYSDFSNTRTGKV CCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCEE SLRYAFTPQVAVRATTSNGFRAPSLQQQFFQSIATDFIAGIPYEIGTFRTDNAAAVALGA EEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCEECCCCEEEEECC EPLKAEKSKNYSLGLVVQPVDDLHVTIDAYRINIDDRIVLSENLTSTAVRHYLQANGYAG CCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCEEE IGGGRYFTNGVDTKTTGLDAISSYHWALSNSTMDFTLGYNYNKTEVKRVADNPARLTAID CCCCCEECCCCCCCCCCHHHHHHEEEEECCCEEEEEEECCCCHHHHHHHCCCCCEEEEEC PSAVRISQAELTRITSGAPRDKAFLSGVWNIGHWSFTATGTRWGEFTVYNTPTAVPVQQR CCCEEEEHHHHHHHCCCCCCCHHHHHHEEECCCEEEEECCCCCCEEEEECCCCCCCHHHH FAPKWTLDLAMSYKLQHWNFTIGGDNVTNTYPERDLIGQGTQAYLPYSRSSPFGFNGAFA CCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCEEE YANISYNW EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA