| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is fepA [H]
Identifier: 182681813
GI number: 182681813
Start: 1404470
End: 1406851
Strand: Direct
Name: fepA [H]
Synonym: XfasM23_1277
Alternate gene names: 182681813
Gene position: 1404470-1406851 (Clockwise)
Preceding gene: 182681811
Following gene: 182681815
Centisome position: 55.39
GC content: 54.24
Gene sequence:
>2382_bases ATGAACCCATTTGTATCTCTCACAGTAGCAAGCGTAACCGCACTCTTTGTTGCCTCCCCTGCGTTCGGTCAGGAGGCCAC GCAATCTACAACGCTGGATACGATGATCGTTACCGGCACGCACGTGACCGAGCGTACTGTGGTGGAATCCCAATCGCCGA TTGACATTATCAGCGCTGCACACTTGGCCGCTACGGGTAGTTCAGAACTGGCTACGGCGCTGTCCCGAATGTTGCCATCA TTAAATTTTCCGCGTCCGGCACTGGCAGATGGCACCTCCGGTATTCGTCCGGCACAGATGCGTGGACTAGCGCCGGATCA AACATTGGTGCTGATCAATGGCAAGCGCCGCCACCTCTCGGCGCAAATCAATGTCAATGGCACGATTGGGCGCGGCAGTT CAGCCGTTGATCTGAACACGATTCCCATCACCGCGATTGAGCGTATAGAAGTGCTGCGTGATGGGGCCTCGGCACAATAT GGCTCAGATGCAATCGCTGGGGTCATCAATATTGTGCTGAAAGGTGCCACTCAGGATGGCAGTTTGGCAGTGGAACACGG CCAGTACAGCGCCGGCGATGGTGCCACATCCAAGTTATCCGGCGATTCCGGAATCTCTTTCGCTAACGGACGCGGCACGC TGCACCTGGCAATGGACATCAGTCAACAAGAGCAGACTAATCGTGCTGGTCCCTATCAAGGGAGCGCGCCCAATACCGGC AACTATCCCGACATTGGACGTACTGCATTTATCTACGGTGATCCACGGGTCAATGCGGTTGCGTTCTCAGCTAATGGCAT GTTCGATGTTGGGGAGCATGTGAAGGGTTACGCCAACGCCATGCTCAGCAACCGCGACATTACGTCGTTTGCGTTCTATC GCTCACGCAATCACAACGGGCAAAGCATGTTGCTGGCGCAGCGATATCCAGAGGGTTACGTGCCTGAAATCGAGCAGAAC AGCAAAGACCGTTCACTGGTTACCGGACTCAAGGGCAGCACCGAGCACGGCTTGAACTGGGATATGAGCTACAACTATGG AAGCAATCATATCGGCTTCCACACCAACAACAGCATTAACTACAGTCTGGGTGTGGAAAGTCCAAGGGATTTCTACGATG GTGCGTTGGAGTACACGCAACACTTGCTCAACACCGATTTTACTAAGGTGCTGGATTGGGGACTGACTTATCCAGTCACA CTCTCCTTCGGCACCGAATACCGCTATGAACAGTGGAATCAGTCCCCTGGCATTCCGGCTTCATATAACGGCATGACCGG CGGCGCACAGGGATTTGCAGGGTTTTCACCTCTGAATACCGTGCATGCGAACCGTAATAATTACGCTCTGTATGCTGGAC TGGATGGCGATCTTAGCGAGCACCTATCTGCAGGAGTGGCCGGGCGGTTCGAGCACTACTCTGATTTTGGCAATCAGACA TCAGGCAAGCTCTCGGCACGCTATGCATTGACTGATCAGGCGGCGCTACGCGCCACCATCGGCAATGGCTTTCGTGCGCC GTCACTGGCACAGCAACGCTACCAAGTGGTCACCAGTACCTACAGTAACGGTACTTTCTACGAGTCAGGGACGTTCCCGA CAACGAGTCCCGTTGCGCAAGCACTGGGTGCAGCGCCGCTGCGGGCTGAATCATCGTTGTCCTATAGCCTGGGTTTGGTA CTACAACCGTTCGAACGGCTTTATTTGACGCTGGATACCTACCAAATCGACATCGCGCACCGGATCTTGCTGTCTTCCAA TCTTAACGATGCAGCGGTCCTTGCTGCACTACAGCAACAAGGCAATAGCAACGTTACCAGCGTTCGCTATTTCGCAAACG CGGCCAATACCCGCACCCGTGGTGTCGACTTGGTCGGTACGTATACGATTCCGTTCGCTGTAGGTCAGCTTGATCTGACT ACAAGCTACAGTGGCATCGCCACCAGGATTCGCAGTGCAGTCACACAGCCAGCAGCACTCTCGGCCATCGGTTCAACGCA GACGATTGTAGGACGGGACGAAATCGGTCGGCTGGAAGAGAGTTTCCCGAAAGACAAGCTGATCCTCAGCGGTACATGGA AGCTGACACAGTGGGATCTGATGCTCGCAGCAACACGCTACGGCACGGTAACGGTGCGTAATCCAACGTCCGTCTCACGC GATCAGACGTACGGCGCTCGCTGGGTAGTCGATGCGTCGGCCAGCTACAAGCCAGACATGCACTGGATGTTGACGTTGGG TGCAAACAATCTGTTGAATGCTTATCCAGATAAAACAGTCAACGCAATCAACTCGATCTACGGACAGATGCCTTACAGCA ACTATGCGCCCTTCGGCTTTAACGGGGCCTACGTGTATGCACGTATTGGTTACAGTTGGTAA
Upstream 100 bases:
>100_bases TTAACGTTATGATTGTTTGGGTTTGGAAAACAGCATAAGACCCTCATTACATGGTTTTGCCATGTCTCTCACACAGCACA ATTTCATGTTGAAGGTTGCA
Downstream 100 bases:
>100_bases GCGCCGCGGCCAGACGCTGCTTGACGGGAATCAGGTGCATCTTCAAAACGCGTGATGCTCTGCTTAGGTATCGCATCGCG TTGCAGTCATCAACGCAGGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Enterobactin outer-membrane receptor [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MNPFVSLTVASVTALFVASPAFGQEATQSTTLDTMIVTGTHVTERTVVESQSPIDIISAAHLAATGSSELATALSRMLPS LNFPRPALADGTSGIRPAQMRGLAPDQTLVLINGKRRHLSAQINVNGTIGRGSSAVDLNTIPITAIERIEVLRDGASAQY GSDAIAGVINIVLKGATQDGSLAVEHGQYSAGDGATSKLSGDSGISFANGRGTLHLAMDISQQEQTNRAGPYQGSAPNTG NYPDIGRTAFIYGDPRVNAVAFSANGMFDVGEHVKGYANAMLSNRDITSFAFYRSRNHNGQSMLLAQRYPEGYVPEIEQN SKDRSLVTGLKGSTEHGLNWDMSYNYGSNHIGFHTNNSINYSLGVESPRDFYDGALEYTQHLLNTDFTKVLDWGLTYPVT LSFGTEYRYEQWNQSPGIPASYNGMTGGAQGFAGFSPLNTVHANRNNYALYAGLDGDLSEHLSAGVAGRFEHYSDFGNQT SGKLSARYALTDQAALRATIGNGFRAPSLAQQRYQVVTSTYSNGTFYESGTFPTTSPVAQALGAAPLRAESSLSYSLGLV LQPFERLYLTLDTYQIDIAHRILLSSNLNDAAVLAALQQQGNSNVTSVRYFANAANTRTRGVDLVGTYTIPFAVGQLDLT TSYSGIATRIRSAVTQPAALSAIGSTQTIVGRDEIGRLEESFPKDKLILSGTWKLTQWDLMLAATRYGTVTVRNPTSVSR DQTYGARWVVDASASYKPDMHWMLTLGANNLLNAYPDKTVNAINSIYGQMPYSNYAPFGFNGAYVYARIGYSW
Sequences:
>Translated_793_residues MNPFVSLTVASVTALFVASPAFGQEATQSTTLDTMIVTGTHVTERTVVESQSPIDIISAAHLAATGSSELATALSRMLPS LNFPRPALADGTSGIRPAQMRGLAPDQTLVLINGKRRHLSAQINVNGTIGRGSSAVDLNTIPITAIERIEVLRDGASAQY GSDAIAGVINIVLKGATQDGSLAVEHGQYSAGDGATSKLSGDSGISFANGRGTLHLAMDISQQEQTNRAGPYQGSAPNTG NYPDIGRTAFIYGDPRVNAVAFSANGMFDVGEHVKGYANAMLSNRDITSFAFYRSRNHNGQSMLLAQRYPEGYVPEIEQN SKDRSLVTGLKGSTEHGLNWDMSYNYGSNHIGFHTNNSINYSLGVESPRDFYDGALEYTQHLLNTDFTKVLDWGLTYPVT LSFGTEYRYEQWNQSPGIPASYNGMTGGAQGFAGFSPLNTVHANRNNYALYAGLDGDLSEHLSAGVAGRFEHYSDFGNQT SGKLSARYALTDQAALRATIGNGFRAPSLAQQRYQVVTSTYSNGTFYESGTFPTTSPVAQALGAAPLRAESSLSYSLGLV LQPFERLYLTLDTYQIDIAHRILLSSNLNDAAVLAALQQQGNSNVTSVRYFANAANTRTRGVDLVGTYTIPFAVGQLDLT TSYSGIATRIRSAVTQPAALSAIGSTQTIVGRDEIGRLEESFPKDKLILSGTWKLTQWDLMLAATRYGTVTVRNPTSVSR DQTYGARWVVDASASYKPDMHWMLTLGANNLLNAYPDKTVNAINSIYGQMPYSNYAPFGFNGAYVYARIGYSW >Mature_793_residues MNPFVSLTVASVTALFVASPAFGQEATQSTTLDTMIVTGTHVTERTVVESQSPIDIISAAHLAATGSSELATALSRMLPS LNFPRPALADGTSGIRPAQMRGLAPDQTLVLINGKRRHLSAQINVNGTIGRGSSAVDLNTIPITAIERIEVLRDGASAQY GSDAIAGVINIVLKGATQDGSLAVEHGQYSAGDGATSKLSGDSGISFANGRGTLHLAMDISQQEQTNRAGPYQGSAPNTG NYPDIGRTAFIYGDPRVNAVAFSANGMFDVGEHVKGYANAMLSNRDITSFAFYRSRNHNGQSMLLAQRYPEGYVPEIEQN SKDRSLVTGLKGSTEHGLNWDMSYNYGSNHIGFHTNNSINYSLGVESPRDFYDGALEYTQHLLNTDFTKVLDWGLTYPVT LSFGTEYRYEQWNQSPGIPASYNGMTGGAQGFAGFSPLNTVHANRNNYALYAGLDGDLSEHLSAGVAGRFEHYSDFGNQT SGKLSARYALTDQAALRATIGNGFRAPSLAQQRYQVVTSTYSNGTFYESGTFPTTSPVAQALGAAPLRAESSLSYSLGLV LQPFERLYLTLDTYQIDIAHRILLSSNLNDAAVLAALQQQGNSNVTSVRYFANAANTRTRGVDLVGTYTIPFAVGQLDLT TSYSGIATRIRSAVTQPAALSAIGSTQTIVGRDEIGRLEESFPKDKLILSGTWKLTQWDLMLAATRYGTVTVRNPTSVSR DQTYGARWVVDASASYKPDMHWMLTLGANNLLNAYPDKTVNAINSIYGQMPYSNYAPFGFNGAYVYARIGYSW
Specific function: This protein is involved in the initial step of iron uptake by binding ferrienterobactin (Fe-ENT), an iron chelatin siderophore that allows E.coli to extract iron from the environment. FepA also acts as a receptor for colicins B and D [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786798, Length=592, Percent_Identity=25.5067567567568, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788478, Length=660, Percent_Identity=22.5757575757576, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85387; Mature: 85387
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPFVSLTVASVTALFVASPAFGQEATQSTTLDTMIVTGTHVTERTVVESQSPIDIISAA CCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCHHHHHHH HLAATGSSELATALSRMLPSLNFPRPALADGTSGIRPAQMRGLAPDQTLVLINGKRRHLS HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCEEEE AQINVNGTIGRGSSAVDLNTIPITAIERIEVLRDGASAQYGSDAIAGVINIVLKGATQDG EEEEECEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC SLAVEHGQYSAGDGATSKLSGDSGISFANGRGTLHLAMDISQQEQTNRAGPYQGSAPNTG CEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHCCCCCCCCCCCCCCC NYPDIGRTAFIYGDPRVNAVAFSANGMFDVGEHVKGYANAMLSNRDITSFAFYRSRNHNG CCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC QSMLLAQRYPEGYVPEIEQNSKDRSLVTGLKGSTEHGLNWDMSYNYGSNHIGFHTNNSIN CEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCEECCCEEE YSLGVESPRDFYDGALEYTQHLLNTDFTKVLDWGLTYPVTLSFGTEYRYEQWNQSPGIPA EEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCC SYNGMTGGAQGFAGFSPLNTVHANRNNYALYAGLDGDLSEHLSAGVAGRFEHYSDFGNQT CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCCC SGKLSARYALTDQAALRATIGNGFRAPSLAQQRYQVVTSTYSNGTFYESGTFPTTSPVAQ CCCEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCEEEECCCCCCCHHHHH ALGAAPLRAESSLSYSLGLVLQPFERLYLTLDTYQIDIAHRILLSSNLNDAAVLAALQQQ HHCCCCCCCCCCCCEEECHHHCCCCEEEEEEEEEEEEHHHEEEECCCCCHHHHHHHHHHC GNSNVTSVRYFANAANTRTRGVDLVGTYTIPFAVGQLDLTTSYSGIATRIRSAVTQPAAL CCCCCEEEEEEECCCCCCCCCEEEEEEEEECEEECEEEEECCCHHHHHHHHHHHCCCHHH SAIGSTQTIVGRDEIGRLEESFPKDKLILSGTWKLTQWDLMLAATRYGTVTVRNPTSVSR HHCCCCEEEECCHHHHHHHHHCCCCEEEEECCEEEEEEEEEEEEEECCEEEECCCCCCCC DQTYGARWVVDASASYKPDMHWMLTLGANNLLNAYPDKTVNAINSIYGQMPYSNYAPFGF CCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC NGAYVYARIGYSW CCEEEEEEECCCC >Mature Secondary Structure MNPFVSLTVASVTALFVASPAFGQEATQSTTLDTMIVTGTHVTERTVVESQSPIDIISAA CCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCHHHHHHH HLAATGSSELATALSRMLPSLNFPRPALADGTSGIRPAQMRGLAPDQTLVLINGKRRHLS HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCEEEE AQINVNGTIGRGSSAVDLNTIPITAIERIEVLRDGASAQYGSDAIAGVINIVLKGATQDG EEEEECEEECCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC SLAVEHGQYSAGDGATSKLSGDSGISFANGRGTLHLAMDISQQEQTNRAGPYQGSAPNTG CEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCHHHHCCCCCCCCCCCCCCC NYPDIGRTAFIYGDPRVNAVAFSANGMFDVGEHVKGYANAMLSNRDITSFAFYRSRNHNG CCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC QSMLLAQRYPEGYVPEIEQNSKDRSLVTGLKGSTEHGLNWDMSYNYGSNHIGFHTNNSIN CEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCEECCCEEE YSLGVESPRDFYDGALEYTQHLLNTDFTKVLDWGLTYPVTLSFGTEYRYEQWNQSPGIPA EEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCC SYNGMTGGAQGFAGFSPLNTVHANRNNYALYAGLDGDLSEHLSAGVAGRFEHYSDFGNQT CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCCC SGKLSARYALTDQAALRATIGNGFRAPSLAQQRYQVVTSTYSNGTFYESGTFPTTSPVAQ CCCEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCEEEECCCCCCCHHHHH ALGAAPLRAESSLSYSLGLVLQPFERLYLTLDTYQIDIAHRILLSSNLNDAAVLAALQQQ HHCCCCCCCCCCCCEEECHHHCCCCEEEEEEEEEEEEHHHEEEECCCCCHHHHHHHHHHC GNSNVTSVRYFANAANTRTRGVDLVGTYTIPFAVGQLDLTTSYSGIATRIRSAVTQPAAL CCCCCEEEEEEECCCCCCCCCEEEEEEEEECEEECEEEEECCCHHHHHHHHHHHCCCHHH SAIGSTQTIVGRDEIGRLEESFPKDKLILSGTWKLTQWDLMLAATRYGTVTVRNPTSVSR HHCCCCEEEECCHHHHHHHHHCCCCEEEEECCEEEEEEEEEEEEEECCEEEECCCCCCCC DQTYGARWVVDASASYKPDMHWMLTLGANNLLNAYPDKTVNAINSIYGQMPYSNYAPFGF CCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC NGAYVYARIGYSW CCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3015941; 8905232; 9278503; 2974033; 2526281; 2201687; 9886293 [H]