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The map label for this gene is ylmE [H]

Identifier: 182681687

GI number: 182681687

Start: 1289688

End: 1290473

Strand: Direct

Name: ylmE [H]

Synonym: XfasM23_1145

Alternate gene names: 182681687

Gene position: 1289688-1290473 (Clockwise)

Preceding gene: 182681686

Following gene: 182681690

Centisome position: 50.86

GC content: 51.91

Gene sequence:

>786_bases
ATGACTGCCTTATCTGTGAAACATGCTGCCGATCCAATACGCGGCTTGCAAACACTGACCGTGGAAGATATTCGCAGCAA
TCTAACCAAGGTGTATAGCCGTATCGTTGCTGCCTGCCAAAGTGTTGACCGCGATCCCAGCAGCGTGACGCTGTTGCCAG
TCAGCAAAACCGCGGATGAAGTGCATATCCGATTATCCTACGAAGCCGGATGCAGGAAGCTCGGAGAGAACAAAGCTCAG
GATGCTTACCACAAGTGGGAAGCGATGAGCGATCTCACTGATCTGTATTGGTCGGTCATTGGGCACCTGCAAACCAATAA
AGCCAAGCTAGTTGCACGGTTTGCCTCGGAATTCCAGGCACTCGATAGTTTTCGTGTTGCAGAAGCATTGGAGCGACGTC
TTCAGATAGAGGGACGTAGCCTCGACGTGTTGATTCAAGTCAATACCTCTGGCGAAACAAACAAATACGGATTACCTCCC
GAAGAAGTTGTCCGTTTCGTACAGGCACTCTCCGCATATCCAGCGCTTCGGGTACGCGGTTTGATGACGTTGGCAATGCT
CTCTGGTGACACCTCGCGGGTGCGGCAATGCTTTACACAGCTGCGCATCCTACGAGATCGCATCCAACAAGCATCACCCC
AGGGCCACCACATAACCGAGCTATCCATGGGCATGTCAGGAGATTTGGAAATAGCTATAGAAGAAGGGGCGACGGTGGTA
CGTGTAGGACAGGCAATCTACGGTGCACGTGCCCTACCCAACCTCCACTTTCACCATACTGTTTAA

Upstream 100 bases:

>100_bases
AGCTTAAGCACATACAGAATATCCTTAGCGGAGTTTCAGATAATCTGAGCAAGGCAATAAACGCGCACTATGTCGGACAA
ATTCTGTGAGGGGGAATCAA

Downstream 100 bases:

>100_bases
GCGCCGCGATTAACTCCTCTCTGAAACTGGTGTTGGTTATAGCAGCGCTTTGAGTCGGTAGAGCGCTTCTAATGCTTGCT
TAGGGGTCAACTCATCAGGA

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTALSVKHAADPIRGLQTLTVEDIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQ
DAYHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPP
EEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVV
RVGQAIYGARALPNLHFHHTV

Sequences:

>Translated_261_residues
MTALSVKHAADPIRGLQTLTVEDIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQ
DAYHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPP
EEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVV
RVGQAIYGARALPNLHFHHTV
>Mature_260_residues
TALSVKHAADPIRGLQTLTVEDIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQD
AYHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPPE
EVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVR
VGQAIYGARALPNLHFHHTV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=3e-23,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=37.5, Blast_Score=138, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=30.0847457627119, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=224, Percent_Identity=32.5892857142857, Blast_Score=95, Evalue=9e-21,
Organism=Drosophila melanogaster, GI45550861, Length=248, Percent_Identity=31.8548387096774, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 28995; Mature: 28863

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSVKHAADPIRGLQTLTVEDIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
VHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQA
EEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRG
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHH
LMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEE
RVGQAIYGARALPNLHFHHTV
EHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TALSVKHAADPIRGLQTLTVEDIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
VHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQA
EEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRG
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHH
LMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEE
RVGQAIYGARALPNLHFHHTV
EHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]