| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is gpmA
Identifier: 182681499
GI number: 182681499
Start: 1117682
End: 1118431
Strand: Reverse
Name: gpmA
Synonym: XfasM23_0953
Alternate gene names: 182681499
Gene position: 1118431-1117682 (Counterclockwise)
Preceding gene: 182681501
Following gene: 182681481
Centisome position: 44.11
GC content: 45.87
Gene sequence:
>750_bases ATGACTCGTAAACTTGTATTGCTACGCCATGGACAGAGTCAATGGAACTCAATGAACCGTTTTACTGGCTGGGTGGATAT AGGGCTGACCGAACAAGGTCATCAAGAAGCCACTATGGCTGGTCATCTGATGAAAAAAGAAGGACTAGAGTTTGATGTCG CTCATACTTCTTTACTTAAGCGGGCGATCCATACATTACAAGACGCACTTAAAGCATTGGACCAGGACTGGTTACCAATT TATAAAAGCTGGCGTCTCAATGAGCGTCACTACGGTGCTCTACAAGGCCTTGATAAAATAGATACCGCAGCTAAACATGG TGAAGAGCAAGTCAATATTTGGCGCCGCTCCTATGACATCCAGCCGCCACCGATTGATCTAGATGACCCAAGCCATCCAA TGCGAGACCGCCGTTACGCCGCTTTGGACCGCAAAGTATTACCTGTGAGGGAATCGCTGAAAAATACACTCGAACGAGTA TTACCGTACTGGAATGATGCCATCGCACCACAACTAAATGACAACAAGACGGTACTTATTAGCGCCCACGGCAACTCATT GCGTGCGTTGTACAAGTACCTTAATAAAGAAAGTGATGAGAAAATCCTAAATGTCAATATCCCTACTGGCATTCCACTTC TATTTGAACTGAGCGATACACTACAAGTAGTGAGTTACCGTTACCTTGGCGATCCAGATGCAGCACAACGCGCTGCCGAA ATGGTAGCAAACCAAGGTAAGGCGAAGTAA
Upstream 100 bases:
>100_bases AAATACCATCATGCCTATATCAGATATTAAGAGCGTATACAGGCAATCTCGACCTGACGTTACAATCATGTTTTAGATAC TTTCAATTCAGGAAAGCCGC
Downstream 100 bases:
>100_bases TACGCAGTTTTTCACGATCACAATAAATACAGGCGTACTACCGAAACGCTAGACTGCAATAAAAACTTTGACTAAGCAGT TGTGGTAGGTATCGGAGTAT
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTRKLVLLRHGQSQWNSMNRFTGWVDIGLTEQGHQEATMAGHLMKKEGLEFDVAHTSLLKRAIHTLQDALKALDQDWLPI YKSWRLNERHYGALQGLDKIDTAAKHGEEQVNIWRRSYDIQPPPIDLDDPSHPMRDRRYAALDRKVLPVRESLKNTLERV LPYWNDAIAPQLNDNKTVLISAHGNSLRALYKYLNKESDEKILNVNIPTGIPLLFELSDTLQVVSYRYLGDPDAAQRAAE MVANQGKAK
Sequences:
>Translated_249_residues MTRKLVLLRHGQSQWNSMNRFTGWVDIGLTEQGHQEATMAGHLMKKEGLEFDVAHTSLLKRAIHTLQDALKALDQDWLPI YKSWRLNERHYGALQGLDKIDTAAKHGEEQVNIWRRSYDIQPPPIDLDDPSHPMRDRRYAALDRKVLPVRESLKNTLERV LPYWNDAIAPQLNDNKTVLISAHGNSLRALYKYLNKESDEKILNVNIPTGIPLLFELSDTLQVVSYRYLGDPDAAQRAAE MVANQGKAK >Mature_248_residues TRKLVLLRHGQSQWNSMNRFTGWVDIGLTEQGHQEATMAGHLMKKEGLEFDVAHTSLLKRAIHTLQDALKALDQDWLPIY KSWRLNERHYGALQGLDKIDTAAKHGEEQVNIWRRSYDIQPPPIDLDDPSHPMRDRRYAALDRKVLPVRESLKNTLERVL PYWNDAIAPQLNDNKTVLISAHGNSLRALYKYLNKESDEKILNVNIPTGIPLLFELSDTLQVVSYRYLGDPDAAQRAAEM VANQGKAK
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily
Homologues:
Organism=Homo sapiens, GI50593010, Length=251, Percent_Identity=52.191235059761, Blast_Score=276, Evalue=1e-74, Organism=Homo sapiens, GI4505753, Length=249, Percent_Identity=53.8152610441767, Blast_Score=264, Evalue=5e-71, Organism=Homo sapiens, GI4502445, Length=251, Percent_Identity=50.996015936255, Blast_Score=256, Evalue=1e-68, Organism=Homo sapiens, GI40353764, Length=251, Percent_Identity=50.996015936255, Blast_Score=256, Evalue=1e-68, Organism=Homo sapiens, GI71274132, Length=249, Percent_Identity=51.8072289156626, Blast_Score=252, Evalue=2e-67, Organism=Homo sapiens, GI310129614, Length=161, Percent_Identity=57.1428571428571, Blast_Score=177, Evalue=9e-45, Organism=Escherichia coli, GI1786970, Length=246, Percent_Identity=56.5040650406504, Blast_Score=290, Evalue=7e-80, Organism=Saccharomyces cerevisiae, GI6322697, Length=244, Percent_Identity=54.0983606557377, Blast_Score=253, Evalue=2e-68, Organism=Saccharomyces cerevisiae, GI6324516, Length=297, Percent_Identity=33.3333333333333, Blast_Score=145, Evalue=6e-36, Organism=Saccharomyces cerevisiae, GI6320183, Length=299, Percent_Identity=34.1137123745819, Blast_Score=144, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6324857, Length=108, Percent_Identity=32.4074074074074, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI24646216, Length=250, Percent_Identity=50.8, Blast_Score=268, Evalue=3e-72, Organism=Drosophila melanogaster, GI85725270, Length=250, Percent_Identity=52.4, Blast_Score=254, Evalue=5e-68, Organism=Drosophila melanogaster, GI85725272, Length=250, Percent_Identity=52.4, Blast_Score=254, Evalue=5e-68, Organism=Drosophila melanogaster, GI24650981, Length=250, Percent_Identity=52.4, Blast_Score=254, Evalue=5e-68, Organism=Drosophila melanogaster, GI28571815, Length=254, Percent_Identity=38.9763779527559, Blast_Score=163, Evalue=1e-40, Organism=Drosophila melanogaster, GI28571817, Length=254, Percent_Identity=38.9763779527559, Blast_Score=162, Evalue=1e-40, Organism=Drosophila melanogaster, GI24648979, Length=254, Percent_Identity=38.9763779527559, Blast_Score=162, Evalue=1e-40,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): GPMA_XYLF2 (B2I4U0)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001829659.1 - ProteinModelPortal: B2I4U0 - SMR: B2I4U0 - GeneID: 6203426 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_0953 - HOGENOM: HBG658938 - OMA: TGWKDPD - ProtClustDB: PRK14115 - GO: GO:0006096 - HAMAP: MF_01039 - InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 - PANTHER: PTHR11931 - SMART: SM00855 - TIGRFAMs: TIGR01258
Pfam domain/function: PF00300 PGAM
EC number: =5.4.2.1
Molecular weight: Translated: 28513; Mature: 28382
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS00175 PG_MUTASE
Important sites: ACT_SITE 10-10 ACT_SITE 183-183
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKLVLLRHGQSQWNSMNRFTGWVDIGLTEQGHQEATMAGHLMKKEGLEFDVAHTSLLK CCCEEEEEECCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHH RAIHTLQDALKALDQDWLPIYKSWRLNERHYGALQGLDKIDTAAKHGEEQVNIWRRSYDI HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCC QPPPIDLDDPSHPMRDRRYAALDRKVLPVRESLKNTLERVLPYWNDAIAPQLNDNKTVLI CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE SAHGNSLRALYKYLNKESDEKILNVNIPTGIPLLFELSDTLQVVSYRYLGDPDAAQRAAE EECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHH MVANQGKAK HHHHCCCCC >Mature Secondary Structure TRKLVLLRHGQSQWNSMNRFTGWVDIGLTEQGHQEATMAGHLMKKEGLEFDVAHTSLLK CCEEEEEECCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHH RAIHTLQDALKALDQDWLPIYKSWRLNERHYGALQGLDKIDTAAKHGEEQVNIWRRSYDI HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCC QPPPIDLDDPSHPMRDRRYAALDRKVLPVRESLKNTLERVLPYWNDAIAPQLNDNKTVLI CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE SAHGNSLRALYKYLNKESDEKILNVNIPTGIPLLFELSDTLQVVSYRYLGDPDAAQRAAE EECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHH MVANQGKAK HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA