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The map label for this gene is yrdA [H]

Identifier: 182681420

GI number: 182681420

Start: 1023095

End: 1023658

Strand: Reverse

Name: yrdA [H]

Synonym: XfasM23_0870

Alternate gene names: 182681420

Gene position: 1023658-1023095 (Counterclockwise)

Preceding gene: 182681421

Following gene: 182681414

Centisome position: 40.37

GC content: 53.9

Gene sequence:

>564_bases
ATGAACCCGATCCGCCCATTCCTGGACAAGACACCACAACTGGGTTGCACCGTATACATCGATCCAACCAGCACCGTGAT
TGGTGATGTCGTCCTGGGCGACGATGTCTCGGTATGGCCACAGACAGTCATCCGTGGCGATGTCAACCAGATACGGATTG
GCGCACGCACTAACATCCAGGACGGCACCATCATCCACGTCAGCCACCACAGCCCCTATAACGCTGCCGGATATCCAACC
CTCATTGGAACAGACGTCACTATCGGACACGGCACCATCATCCATGCCTGCACCATTGAGAAGCTATGTCTCATCGGAAT
GGGTGCCTGCATCCTGGATGGAGTCACCATCAAAAAATACGGCTTCGTCGGTGCCGGAGCTGTCATCAGCCCCAACAAAA
TCGTGGGTGAAGCAGAACTTTGGCTCGGTAACCCAGCACGCCTAGTACGCAAGCTCAGCGACAAAGAAATCGAAAGCCTG
CACTATTCGGCGCAGCATTACGTCAAACTGAAAAACCGCTACTTAGATTTAAGCGCAGAAACCACGACTACCCCCTCTGC
CTAG

Upstream 100 bases:

>100_bases
TCAGCTTAGAGAGGCATACCTCAAAGTATCGGCGTCACTTCGGCTTCACTCCTGCTGCACGCTATGATTCATTGCCTGAC
CGCATCCATCTGGAGTACAC

Downstream 100 bases:

>100_bases
CACTCACGCCACATAATACCCTCATCACTGCCACACCCAAGGCTCCATCACCGACAGCCGCTTAAGGGGAACATCGCTGT
AGGTCGATTCAGATTCCCGA

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNPIRPFLDKTPQLGCTVYIDPTSTVIGDVVLGDDVSVWPQTVIRGDVNQIRIGARTNIQDGTIIHVSHHSPYNAAGYPT
LIGTDVTIGHGTIIHACTIEKLCLIGMGACILDGVTIKKYGFVGAGAVISPNKIVGEAELWLGNPARLVRKLSDKEIESL
HYSAQHYVKLKNRYLDLSAETTTTPSA

Sequences:

>Translated_187_residues
MNPIRPFLDKTPQLGCTVYIDPTSTVIGDVVLGDDVSVWPQTVIRGDVNQIRIGARTNIQDGTIIHVSHHSPYNAAGYPT
LIGTDVTIGHGTIIHACTIEKLCLIGMGACILDGVTIKKYGFVGAGAVISPNKIVGEAELWLGNPARLVRKLSDKEIESL
HYSAQHYVKLKNRYLDLSAETTTTPSA
>Mature_187_residues
MNPIRPFLDKTPQLGCTVYIDPTSTVIGDVVLGDDVSVWPQTVIRGDVNQIRIGARTNIQDGTIIHVSHHSPYNAAGYPT
LIGTDVTIGHGTIIHACTIEKLCLIGMGACILDGVTIKKYGFVGAGAVISPNKIVGEAELWLGNPARLVRKLSDKEIESL
HYSAQHYVKLKNRYLDLSAETTTTPSA

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=178, Percent_Identity=50, Blast_Score=188, Evalue=2e-49,
Organism=Escherichia coli, GI1787667, Length=174, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87081681, Length=170, Percent_Identity=32.9411764705882, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20176; Mature: 20176

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIRPFLDKTPQLGCTVYIDPTSTVIGDVVLGDDVSVWPQTVIRGDVNQIRIGARTNIQ
CCCCCCHHCCCCCCCEEEEECCCHHHEEEEEECCCCCCCCHHHHHCCCCEEEECCCCCCC
DGTIIHVSHHSPYNAAGYPTLIGTDVTIGHGTIIHACTIEKLCLIGMGACILDGVTIKKY
CCEEEEEECCCCCCCCCCCEEEECEEEECCCCEEEEHHHHHHHHHCCCHHHHCCEEEEEC
GFVGAGAVISPNKIVGEAELWLGNPARLVRKLSDKEIESLHYSAQHYVKLKNRYLDLSAE
CCCCCCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHHHHHHEEEEEEEEEECCC
TTTTPSA
CCCCCCC
>Mature Secondary Structure
MNPIRPFLDKTPQLGCTVYIDPTSTVIGDVVLGDDVSVWPQTVIRGDVNQIRIGARTNIQ
CCCCCCHHCCCCCCCEEEEECCCHHHEEEEEECCCCCCCCHHHHHCCCCEEEECCCCCCC
DGTIIHVSHHSPYNAAGYPTLIGTDVTIGHGTIIHACTIEKLCLIGMGACILDGVTIKKY
CCEEEEEECCCCCCCCCCCEEEECEEEECCCCEEEEHHHHHHHHHCCCHHHHCCEEEEEC
GFVGAGAVISPNKIVGEAELWLGNPARLVRKLSDKEIESLHYSAQHYVKLKNRYLDLSAE
CCCCCCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHHHHHHEEEEEEEEEECCC
TTTTPSA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]