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The map label for this gene is yjfR [C]

Identifier: 182681386

GI number: 182681386

Start: 988038

End: 989036

Strand: Reverse

Name: yjfR [C]

Synonym: XfasM23_0835

Alternate gene names: 182681386

Gene position: 989036-988038 (Counterclockwise)

Preceding gene: 182681387

Following gene: 182681385

Centisome position: 39.0

GC content: 57.66

Gene sequence:

>999_bases
ATGCCACATAACCGCTACTATCAAGGCCCATTAAGCGACCACTTCGACGGCCTACGCTTCTTCAATCCAGGCCAACCCAA
CACCGACAAACCATTCAGCGATCTGTTGCGCTGGCGCTGGGAGAGTCGCCACCTGCCCCCTTGGCGCGACGTACCACCCA
CCCACGTCGCTACCCCCATCGCACGCAGCCAGCACCCCATCATCACCATGATTGGCCACTCCAGCGTGCTGATACAAATT
GCAGGACTCAACCTACTCGTTGACCCCGTATGGTCCGAACGGGTCAGCCCACTCTCCTGGTTGGGTCCGCGACGTTGGAA
CTCCCCTGGTATCGACTTCAACGCATTACCGCCCATTGATTATGTACTCATCACCCACAACCACTACGATCATCTGGACC
TGACCACCCTGGCACGCCTCCAGATAGCTCATGCCCCCCAAGTGGTCACCCCACTGGGCAACGATGCCATCATCCGCAAG
CGCGTCCCTGACCTGCATATACACACCCTTGATTGGTGGGATTCAATACAACTGACAAACGAACCCACCAAAATCAGCGT
CGTCCCCGCCTACCACTGGTCGGCACGCGGCTTACGAGACAGGCGCATGGCACTGTGGGGCGGCTTCCACCTACACACAC
CCCAAGGGAGCCTCTACATTGCTGGCGACACCGCCTATGGGAATGGCAGCATCTTCCACGCAATAGCGCAACGCTGCGGT
GCTCCAGATCTGGCCATCCTGCCTATCGGCGCCTATGCGCCACGCTGGTTCATGCACAACCAACACATCAATGCCGTAGA
AGCCGTGCAGATTATGTGCGACGTAGGCGCACACCAAGCCTTGGGAGTGCATTGGGGCACCTTCCGCCTGACCGACGAAG
CCGTAGAAGAACCACCTACCCTCTTAGCTCAAGCCCTAAAAGCCAAAGGCATTCCTGCAACCCGCTTCATTGCGATGACA
CCCGGTCAAATAAATCGGTGGAAAGCTTCCGAACGCTAA

Upstream 100 bases:

>100_bases
AGTCTGGCACAGACCAGCTCGCCGTAAAGGCACCTCACACCAGCCCCCTTCGGACCATCAGTGACATCCCTCGATCACTG
TCCACAACCATCACTGCCCC

Downstream 100 bases:

>100_bases
TAATGCAGTTGATTGGGATAATGCTGCCCAATGTTGGTATGCAAATCCTGGAGCTGATCTTGATAAGTTGAAGCCGTGGA
TTGCTACGGAGATCATGAGT

Product: putative Zn-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MPHNRYYQGPLSDHFDGLRFFNPGQPNTDKPFSDLLRWRWESRHLPPWRDVPPTHVATPIARSQHPIITMIGHSSVLIQI
AGLNLLVDPVWSERVSPLSWLGPRRWNSPGIDFNALPPIDYVLITHNHYDHLDLTTLARLQIAHAPQVVTPLGNDAIIRK
RVPDLHIHTLDWWDSIQLTNEPTKISVVPAYHWSARGLRDRRMALWGGFHLHTPQGSLYIAGDTAYGNGSIFHAIAQRCG
APDLAILPIGAYAPRWFMHNQHINAVEAVQIMCDVGAHQALGVHWGTFRLTDEAVEEPPTLLAQALKAKGIPATRFIAMT
PGQINRWKASER

Sequences:

>Translated_332_residues
MPHNRYYQGPLSDHFDGLRFFNPGQPNTDKPFSDLLRWRWESRHLPPWRDVPPTHVATPIARSQHPIITMIGHSSVLIQI
AGLNLLVDPVWSERVSPLSWLGPRRWNSPGIDFNALPPIDYVLITHNHYDHLDLTTLARLQIAHAPQVVTPLGNDAIIRK
RVPDLHIHTLDWWDSIQLTNEPTKISVVPAYHWSARGLRDRRMALWGGFHLHTPQGSLYIAGDTAYGNGSIFHAIAQRCG
APDLAILPIGAYAPRWFMHNQHINAVEAVQIMCDVGAHQALGVHWGTFRLTDEAVEEPPTLLAQALKAKGIPATRFIAMT
PGQINRWKASER
>Mature_331_residues
PHNRYYQGPLSDHFDGLRFFNPGQPNTDKPFSDLLRWRWESRHLPPWRDVPPTHVATPIARSQHPIITMIGHSSVLIQIA
GLNLLVDPVWSERVSPLSWLGPRRWNSPGIDFNALPPIDYVLITHNHYDHLDLTTLARLQIAHAPQVVTPLGNDAIIRKR
VPDLHIHTLDWWDSIQLTNEPTKISVVPAYHWSARGLRDRRMALWGGFHLHTPQGSLYIAGDTAYGNGSIFHAIAQRCGA
PDLAILPIGAYAPRWFMHNQHINAVEAVQIMCDVGAHQALGVHWGTFRLTDEAVEEPPTLLAQALKAKGIPATRFIAMTP
GQINRWKASER

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=259, Percent_Identity=37.4517374517375, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI170932481, Length=259, Percent_Identity=37.4517374517375, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17543100, Length=275, Percent_Identity=33.0909090909091, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17543102, Length=275, Percent_Identity=33.0909090909091, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI25148824, Length=275, Percent_Identity=33.0909090909091, Blast_Score=168, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17543104, Length=274, Percent_Identity=34.3065693430657, Blast_Score=164, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6325154, Length=256, Percent_Identity=36.328125, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37460; Mature: 37329

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHNRYYQGPLSDHFDGLRFFNPGQPNTDKPFSDLLRWRWESRHLPPWRDVPPTHVATPI
CCCCCEECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCC
ARSQHPIITMIGHSSVLIQIAGLNLLVDPVWSERVSPLSWLGPRRWNSPGIDFNALPPID
CCCCCCEEEEECCCEEEEEEECCEEEECCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCE
YVLITHNHYDHLDLTTLARLQIAHAPQVVTPLGNDAIIRKRVPDLHIHTLDWWDSIQLTN
EEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCEEECCCCCEEEEEECCCCCEEECC
EPTKISVVPAYHWSARGLRDRRMALWGGFHLHTPQGSLYIAGDTAYGNGSIFHAIAQRCG
CCCEEEEEECCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCC
APDLAILPIGAYAPRWFMHNQHINAVEAVQIMCDVGAHQALGVHWGTFRLTDEAVEEPPT
CCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHCCHH
LLAQALKAKGIPATRFIAMTPGQINRWKASER
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PHNRYYQGPLSDHFDGLRFFNPGQPNTDKPFSDLLRWRWESRHLPPWRDVPPTHVATPI
CCCCEECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCC
ARSQHPIITMIGHSSVLIQIAGLNLLVDPVWSERVSPLSWLGPRRWNSPGIDFNALPPID
CCCCCCEEEEECCCEEEEEEECCEEEECCHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCE
YVLITHNHYDHLDLTTLARLQIAHAPQVVTPLGNDAIIRKRVPDLHIHTLDWWDSIQLTN
EEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCEEECCCCCEEEEEECCCCCEEECC
EPTKISVVPAYHWSARGLRDRRMALWGGFHLHTPQGSLYIAGDTAYGNGSIFHAIAQRCG
CCCEEEEEECCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCC
APDLAILPIGAYAPRWFMHNQHINAVEAVQIMCDVGAHQALGVHWGTFRLTDEAVEEPPT
CCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHCCHH
LLAQALKAKGIPATRFIAMTPGQINRWKASER
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]