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The map label for this gene is ygdL [C]

Identifier: 182681350

GI number: 182681350

Start: 940816

End: 941613

Strand: Reverse

Name: ygdL [C]

Synonym: XfasM23_0797

Alternate gene names: 182681350

Gene position: 941613-940816 (Counterclockwise)

Preceding gene: 182681353

Following gene: 182681344

Centisome position: 37.13

GC content: 49.25

Gene sequence:

>798_bases
ATGAGGAATGAACACTGGGGCGAACGCTTCTCCGGTATCGATCGGCTATATGGCCTAGGCACGGTTGCACGGCTGTCGAC
ATGTCGTGTGGCGGTCATCGGAATAGGTGGAGTCGGTTCGTGGATTGTCGAAGCACTTGCACGCTCGGCTATAGGGTACA
TGAGCTTGATTGACGCAGACGATCTCTGTATCTCCAATACCAATCGCCAGCTACCTGCACTGATAGGTCAATACGGAAGG
AACAAAGCGCAGGCAATGGCTGAACGTTGCCGTGCAATTAATCCCAGGATCAACGTGTCAGCAACAGAGTTATTTTTGGC
AAGGAGCAACATGGAAGCACTGCTTGGGGAAAATTTCGATTTGATTATTGATGCTTGCGACAGCTTTCGGATCAAAGTTG
AAACTATCGTTTCCTGTCGGCGCCATAAACAACCCCTGATCACCGTTGGTGCTGCAGGGGGACGTACTGAACCGACTCTA
GTGCGGGTACGCGATATCTCTCGAACGGAACACGATACGCTGCTTGCTTTGATCCGTAAGAAATTGCGTAGCGAATTCCA
TTTTCCCAAGAATCCGAAACGCTATTTTGGTGTGCCCGCAGTGTATTCATTGGAGAATGTGAAATATCCACAAGCTGACG
GTAGCGTCTGTGGAATACGACCATCATTAATCAGCAACGCAGCACTGAATCTAGATTGCAGCACAGGCCTTGGCGCAGCA
ACTCACGTCACTGGTGCATTTGCCTTTGCTGCAACTGGCAAAGCAATTGAGATGTTACTCACACCAAAGAAAAGATAA

Upstream 100 bases:

>100_bases
ACTGAGCAGCTTACTCCTTTCAAAAACATCTATAGAAATATTTAACACCCGTTATAGGGGGAATCGAGTGGTAGAGACAC
AAGACAAGGAAATACATGAC

Downstream 100 bases:

>100_bases
GTAAGGATTCACATTCGCTCTTGTTCATTACGCTGTACTTGCGGGGTAACGAAATAACACGGAAACACGCGATTAATAAA
AAGTGAATAAAGTGACAATA

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRNEHWGERFSGIDRLYGLGTVARLSTCRVAVIGIGGVGSWIVEALARSAIGYMSLIDADDLCISNTNRQLPALIGQYGR
NKAQAMAERCRAINPRINVSATELFLARSNMEALLGENFDLIIDACDSFRIKVETIVSCRRHKQPLITVGAAGGRTEPTL
VRVRDISRTEHDTLLALIRKKLRSEFHFPKNPKRYFGVPAVYSLENVKYPQADGSVCGIRPSLISNAALNLDCSTGLGAA
THVTGAFAFAATGKAIEMLLTPKKR

Sequences:

>Translated_265_residues
MRNEHWGERFSGIDRLYGLGTVARLSTCRVAVIGIGGVGSWIVEALARSAIGYMSLIDADDLCISNTNRQLPALIGQYGR
NKAQAMAERCRAINPRINVSATELFLARSNMEALLGENFDLIIDACDSFRIKVETIVSCRRHKQPLITVGAAGGRTEPTL
VRVRDISRTEHDTLLALIRKKLRSEFHFPKNPKRYFGVPAVYSLENVKYPQADGSVCGIRPSLISNAALNLDCSTGLGAA
THVTGAFAFAATGKAIEMLLTPKKR
>Mature_265_residues
MRNEHWGERFSGIDRLYGLGTVARLSTCRVAVIGIGGVGSWIVEALARSAIGYMSLIDADDLCISNTNRQLPALIGQYGR
NKAQAMAERCRAINPRINVSATELFLARSNMEALLGENFDLIIDACDSFRIKVETIVSCRRHKQPLITVGAAGGRTEPTL
VRVRDISRTEHDTLLALIRKKLRSEFHFPKNPKRYFGVPAVYSLENVKYPQADGSVCGIRPSLISNAALNLDCSTGLGAA
THVTGAFAFAATGKAIEMLLTPKKR

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=263, Percent_Identity=42.2053231939163, Blast_Score=230, Evalue=9e-62,
Organism=Escherichia coli, GI1787048, Length=128, Percent_Identity=29.6875, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082356, Length=130, Percent_Identity=29.2307692307692, Blast_Score=61, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321790, Length=157, Percent_Identity=28.6624203821656, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28947; Mature: 28947

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEHWGERFSGIDRLYGLGTVARLSTCRVAVIGIGGVGSWIVEALARSAIGYMSLIDAD
CCCCCHHHHHHHHHHHHHCHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC
DLCISNTNRQLPALIGQYGRNKAQAMAERCRAINPRINVSATELFLARSNMEALLGENFD
CCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCE
LIIDACDSFRIKVETIVSCRRHKQPLITVGAAGGRTEPTLVRVRDISRTEHDTLLALIRK
EEEECCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
KLRSEFHFPKNPKRYFGVPAVYSLENVKYPQADGSVCGIRPSLISNAALNLDCSTGLGAA
HHHHHCCCCCCCHHHCCCCCEEECCCCCCCCCCCCEECCCHHHHCCCEEEEECCCCCCCH
THVTGAFAFAATGKAIEMLLTPKKR
HHHHHHHHHHHCCCEEEEEECCCCC
>Mature Secondary Structure
MRNEHWGERFSGIDRLYGLGTVARLSTCRVAVIGIGGVGSWIVEALARSAIGYMSLIDAD
CCCCCHHHHHHHHHHHHHCHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC
DLCISNTNRQLPALIGQYGRNKAQAMAERCRAINPRINVSATELFLARSNMEALLGENFD
CCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCE
LIIDACDSFRIKVETIVSCRRHKQPLITVGAAGGRTEPTLVRVRDISRTEHDTLLALIRK
EEEECCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
KLRSEFHFPKNPKRYFGVPAVYSLENVKYPQADGSVCGIRPSLISNAALNLDCSTGLGAA
HHHHHCCCCCCCHHHCCCCCEEECCCCCCCCCCCCEECCCHHHHCCCEEEEECCCCCCCH
THVTGAFAFAATGKAIEMLLTPKKR
HHHHHHHHHHHCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]