| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is cysI
Identifier: 182681304
GI number: 182681304
Start: 885893
End: 887599
Strand: Reverse
Name: cysI
Synonym: XfasM23_0751
Alternate gene names: 182681304
Gene position: 887599-885893 (Counterclockwise)
Preceding gene: 182681305
Following gene: 182681303
Centisome position: 35.0
GC content: 56.94
Gene sequence:
>1707_bases ATGAGTTCCTCCTCCATTGAAGACATCAAGGGCAAGAGCCACCGCCTGCGGGGGTCTCTGTTGGAGAGTCTCGCAAATCC AACCACCGGGGCGCTCGGCGAAAGCGACCAAACGCTGATTAAGTACCACGGCAGCTACCAGCAGGATGATCGTGATCTAC GTGAGGAGCGCCGTCGGCAAAAACTCGAACCTGCTTACCAATTCATGATCCGCACCCGAACACCTGGCGGCGTCATCACG CCGCAGCAGTGGCTGCAGTTGGATGCCATCGCCACGCGCTACGCCAACCACTCATTGCGCGTCACAACACGTCAGGCATT CCAGTTCCACGGAGTCATCAAACGCGAATTGAAAACAACAATGCAGGCAATCAACGCGGCATTGATCGATACACTTGCGG CCTGCGGGGATGTCAATCGCAACGTACAGGTCGCTGCCAATCCATTGCTCTCGCGTGCCCATGCAGACCTTTATACCGAC GCAGCGCACCTGTCTGAGCATCTGCTACCCAACACACGCGCTTACTACGAAATTTGGCTGGATGAAAAAAAGGTCGCTGG TGCCGGTGAGGAAGAGGAACCAATCTACGGCCCGCACTATCTACCGCGTAAATTCAAAATCGGTTTTGCCGCACCACCAA TCAACGATGTCGATGTATTCGCCAACGACCTGGGGTTTATCGCAGTCATCGTTGACAACACTTTGCTTGGCTATAACGTC ACTATCGGCGGCGGAATGGGGACAACGCATGGTGACCCCGACACGTGGCCTCGCGTCGGCAACATCATCGGCTTCATCAC CCGCGCCGATCTGATCACAATCAGCACGGCCATCGTGACCACGCAACGCGACTTCGGCAATCGAACGCTACGCAAGCGCG CCCGCTTCAAATACACCATTGATGACCGCGGTCTAGATTGCATCGTCGGCGAGATCCAGCAGCGCGCCGGCATCACACTG CAACCAGCACGACCGTTTGTATTCGAACACAATGGGGACCGTTACGGGTGGATTGAAGGTGAGGACGGGCACTGGCATCT GACCTTATCGCTACCAGCTGGCCGCATCGCCGATACCGAAGGCAGCACGCTGCTGAGTGGCTTCCGAGAAATCGCACAAC TTGGCATCGGCGAATTCCGCATGACTCCGAATCAGAATGTCGTGATTGCTGGCATCTCTCCCGGACAGCGCGCCGCAATC GACGCACTGGTCACCCAGTACGGTCTGGATACCGGTAACCGTGCGCCCACAGCCCTCGGACGTCACGCCATGGCGTGTGT CGCACTCCCGACCTGCGGTCTAGCGATGGCCGAAGCAGAACGTTATCTGCCGGACTTCAACGCGAAGCTACAGCCCATCC TGGAAAAATATGGACTTGCTGAAGCACCCATTCTGCTGCGCATTTCCGGGTGTCCAAACGGCTGCTCCCGCCCCTATCTC GCCGAAATTGCGTTGGTCGGTAAAGCCCCTGGACGCTATAACCTCATGCTCGGAGGCGATCAACGCGGCCAGCGCCTCAA CACGCTGTATCGGGAAAACATCACCGAAACTGAAATCCTTGCGGCACTAGAACCATTGCTGGGCCGCTATCAACAGAAAC GCCTTCCGAGCGAAGGCTTTGGCGATTTTCTACATCGCACCGGCATCATCGCACTTCCCCCATATCCCACCCACCGACAC GTGATTTCCTCAACGCTGCAAGCATGA
Upstream 100 bases:
>100_bases GTATCGTGGCCATGCGTCGCTACAATCCCAACGACACATGGCGACCATGTCGCCCCAAACATCCTTGTCCATCCTCCTCC ATCCGGGATCGCCTGCACCC
Downstream 100 bases:
>100_bases CCGTACTTCCCGCCTTACCTCCTCTGGACGATCTGGAAACGCTCAACGTCCACCTAGAAACGCTGAGTGCTGAAAATCGC GTGTGCTGGGCACTGGAGCA
Product: sulfite reductase subunit beta
Products: NA
Alternate protein names: SiR-HP; SiRHP
Number of amino acids: Translated: 568; Mature: 567
Protein sequence:
>568_residues MSSSSIEDIKGKSHRLRGSLLESLANPTTGALGESDQTLIKYHGSYQQDDRDLREERRRQKLEPAYQFMIRTRTPGGVIT PQQWLQLDAIATRYANHSLRVTTRQAFQFHGVIKRELKTTMQAINAALIDTLAACGDVNRNVQVAANPLLSRAHADLYTD AAHLSEHLLPNTRAYYEIWLDEKKVAGAGEEEEPIYGPHYLPRKFKIGFAAPPINDVDVFANDLGFIAVIVDNTLLGYNV TIGGGMGTTHGDPDTWPRVGNIIGFITRADLITISTAIVTTQRDFGNRTLRKRARFKYTIDDRGLDCIVGEIQQRAGITL QPARPFVFEHNGDRYGWIEGEDGHWHLTLSLPAGRIADTEGSTLLSGFREIAQLGIGEFRMTPNQNVVIAGISPGQRAAI DALVTQYGLDTGNRAPTALGRHAMACVALPTCGLAMAEAERYLPDFNAKLQPILEKYGLAEAPILLRISGCPNGCSRPYL AEIALVGKAPGRYNLMLGGDQRGQRLNTLYRENITETEILAALEPLLGRYQQKRLPSEGFGDFLHRTGIIALPPYPTHRH VISSTLQA
Sequences:
>Translated_568_residues MSSSSIEDIKGKSHRLRGSLLESLANPTTGALGESDQTLIKYHGSYQQDDRDLREERRRQKLEPAYQFMIRTRTPGGVIT PQQWLQLDAIATRYANHSLRVTTRQAFQFHGVIKRELKTTMQAINAALIDTLAACGDVNRNVQVAANPLLSRAHADLYTD AAHLSEHLLPNTRAYYEIWLDEKKVAGAGEEEEPIYGPHYLPRKFKIGFAAPPINDVDVFANDLGFIAVIVDNTLLGYNV TIGGGMGTTHGDPDTWPRVGNIIGFITRADLITISTAIVTTQRDFGNRTLRKRARFKYTIDDRGLDCIVGEIQQRAGITL QPARPFVFEHNGDRYGWIEGEDGHWHLTLSLPAGRIADTEGSTLLSGFREIAQLGIGEFRMTPNQNVVIAGISPGQRAAI DALVTQYGLDTGNRAPTALGRHAMACVALPTCGLAMAEAERYLPDFNAKLQPILEKYGLAEAPILLRISGCPNGCSRPYL AEIALVGKAPGRYNLMLGGDQRGQRLNTLYRENITETEILAALEPLLGRYQQKRLPSEGFGDFLHRTGIIALPPYPTHRH VISSTLQA >Mature_567_residues SSSSIEDIKGKSHRLRGSLLESLANPTTGALGESDQTLIKYHGSYQQDDRDLREERRRQKLEPAYQFMIRTRTPGGVITP QQWLQLDAIATRYANHSLRVTTRQAFQFHGVIKRELKTTMQAINAALIDTLAACGDVNRNVQVAANPLLSRAHADLYTDA AHLSEHLLPNTRAYYEIWLDEKKVAGAGEEEEPIYGPHYLPRKFKIGFAAPPINDVDVFANDLGFIAVIVDNTLLGYNVT IGGGMGTTHGDPDTWPRVGNIIGFITRADLITISTAIVTTQRDFGNRTLRKRARFKYTIDDRGLDCIVGEIQQRAGITLQ PARPFVFEHNGDRYGWIEGEDGHWHLTLSLPAGRIADTEGSTLLSGFREIAQLGIGEFRMTPNQNVVIAGISPGQRAAID ALVTQYGLDTGNRAPTALGRHAMACVALPTCGLAMAEAERYLPDFNAKLQPILEKYGLAEAPILLRISGCPNGCSRPYLA EIALVGKAPGRYNLMLGGDQRGQRLNTLYRENITETEILAALEPLLGRYQQKRLPSEGFGDFLHRTGIIALPPYPTHRHV ISSTLQA
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate
COG id: COG0155
COG function: function code P; Sulfite reductase, beta subunit (hemoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Homologues:
Organism=Escherichia coli, GI1789122, Length=548, Percent_Identity=46.8978102189781, Blast_Score=532, Evalue=1e-152, Organism=Saccharomyces cerevisiae, GI6322597, Length=576, Percent_Identity=45.6597222222222, Blast_Score=524, Evalue=1e-149,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): CYSI_XYLF2 (B2IA31)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001829464.1 - GeneID: 6202438 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_0751 - HOGENOM: HBG626671 - OMA: TRQAFQM - ProtClustDB: PRK13504 - HAMAP: MF_01540 - InterPro: IPR011786 - InterPro: IPR005117 - InterPro: IPR006067 - InterPro: IPR006066 - PRINTS: PR00397 - TIGRFAMs: TIGR02041
Pfam domain/function: PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; SSF55124 NiR_SiRalpha_1/3
EC number: =1.8.1.2
Molecular weight: Translated: 62682; Mature: 62551
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSSIEDIKGKSHRLRGSLLESLANPTTGALGESDQTLIKYHGSYQQDDRDLREERRRQ CCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH KLEPAYQFMIRTRTPGGVITPQQWLQLDAIATRYANHSLRVTTRQAFQFHGVIKRELKTT HCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH MQAINAALIDTLAACGDVNRNVQVAANPLLSRAHADLYTDAAHLSEHLLPNTRAYYEIWL HHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE DEKKVAGAGEEEEPIYGPHYLPRKFKIGFAAPPINDVDVFANDLGFIAVIVDNTLLGYNV CCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEEECCEEEEEEE TIGGGMGTTHGDPDTWPRVGNIIGFITRADLITISTAIVTTQRDFGNRTLRKRARFKYTI EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEEEECHHHCCHHHHHHHCEEEEE DDRGLDCIVGEIQQRAGITLQPARPFVFEHNGDRYGWIEGEDGHWHLTLSLPAGRIADTE CCCCCHHHHHHHHHHCCCEEECCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCC GSTLLSGFREIAQLGIGEFRMTPNQNVVIAGISPGQRAAIDALVTQYGLDTGNRAPTALG CHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH RHAMACVALPTCGLAMAEAERYLPDFNAKLQPILEKYGLAEAPILLRISGCPNGCSRPYL HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE AEIALVGKAPGRYNLMLGGDQRGQRLNTLYRENITETEILAALEPLLGRYQQKRLPSEGF EEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHH GDFLHRTGIIALPPYPTHRHVISSTLQA HHHHHHCCEEEECCCCCHHHHHHHHHCC >Mature Secondary Structure SSSSIEDIKGKSHRLRGSLLESLANPTTGALGESDQTLIKYHGSYQQDDRDLREERRRQ CCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH KLEPAYQFMIRTRTPGGVITPQQWLQLDAIATRYANHSLRVTTRQAFQFHGVIKRELKTT HCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH MQAINAALIDTLAACGDVNRNVQVAANPLLSRAHADLYTDAAHLSEHLLPNTRAYYEIWL HHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE DEKKVAGAGEEEEPIYGPHYLPRKFKIGFAAPPINDVDVFANDLGFIAVIVDNTLLGYNV CCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEEEEEECCEEEEEEE TIGGGMGTTHGDPDTWPRVGNIIGFITRADLITISTAIVTTQRDFGNRTLRKRARFKYTI EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEEEECHHHCCHHHHHHHCEEEEE DDRGLDCIVGEIQQRAGITLQPARPFVFEHNGDRYGWIEGEDGHWHLTLSLPAGRIADTE CCCCCHHHHHHHHHHCCCEEECCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCC GSTLLSGFREIAQLGIGEFRMTPNQNVVIAGISPGQRAAIDALVTQYGLDTGNRAPTALG CHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH RHAMACVALPTCGLAMAEAERYLPDFNAKLQPILEKYGLAEAPILLRISGCPNGCSRPYL HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE AEIALVGKAPGRYNLMLGGDQRGQRLNTLYRENITETEILAALEPLLGRYQQKRLPSEGF EEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHH GDFLHRTGIIALPPYPTHRHVISSTLQA HHHHHHCCEEEECCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA