Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182681075
Identifier: 182681075
GI number: 182681075
Start: 623783
End: 624958
Strand: Reverse
Name: 182681075
Synonym: XfasM23_0517
Alternate gene names: NA
Gene position: 624958-623783 (Counterclockwise)
Preceding gene: 182681076
Following gene: 182681074
Centisome position: 24.65
GC content: 47.7
Gene sequence:
>1176_bases ATGTCTCGTCGCTCTTCTTCTTCTGATTCTGCGGTTTATGTTAATTTTTTGGAGCGTGAGCGTCGTGCTGATGTTGAGAA GGCTGCTCGCTTATATGAGACGCGTCGCGATCGTGTAGAGCCGTCTTATGTGTTTCCTGCTCCGTCCGGTGAAAAGAGGG TTGGCCCGAACAGTAATACGGGCCAAAAGGGTGTTGTTGGGTCTTATCCTGTTTCTATCGATTATTTGACGGTTGTTTTT AGTTATGCCCGTTTGGCAGAGGCGGGTTATTTTGATGAGCCTCGTTTTCTTCTTTACTTGTTATTTGGTTTGAGCGTTGA TGATGTCATCGTGGGTTCTCATACCTCTGTGCGTTGGCATTTTTATAATTCAAGTGCTTCTATTATAGATTCTAATGGGG ATCTGGTTGGCAAGATTGGTTGGGATGGCAATGCGGATTCGTATTGTATTAGTTTGACGGGTTCGGCTTGCCGTTATATT CATGATTGGTCAAAGGTGAAACGTTCATTGGCTTCTTTGGATGCGCGGATTACTCGTTGTGATGTGGCTTATGATGACTA TGACGGTATATTGGGGACGGTTCGGCATCATGAGGCCCTTGCGCGTGAGCATTTAGCTCCTGCGGGTGGTTGTTTGTTGT TTTCTTCTGGTGGGACTCCTCCGCGTACGCGTTTTCTAGATGATCATGGAGGCGGGTCTGGGTGTACGTTGTATGTGGGG CAACGTGGGCATAAGCAATTGTGCATTTATGAGAAAGGCAAGCAGCTTGGTGTGGCTGAATCTCCCTGGGTGCGTTATGA GGTGCGTTTATATGCCAAGCATGCTGTGATTCCTTTTGACTTATTAGAGGAACCCATGCGTTATTTGCGTGGTTCTTATG ATTATTTGTGCCAGTTATTTTCTTCTGTTGTTGTTTCTCCTGTGAGTCGTATTCGGACGGTGGTAAAGCATGTGGAGGCG ACAGGTGAGGCGTTGGTTCGCTGGCTGCGTCGTCAGGTCGGGCCTGCGTTAGGGGTGTTGCGTCAAGCGTTGGGGTGTGG GTTTTCTGATTTTATTGTTGATCGTGTGGAGCGTGAGGGCTTGCCTTCTCGTTTTCGGCGTATTTGTAGGGGAGGGGATT TGCTTGCGTATTTGCGAGAGACGTTAATAGATTGTTCTGTGGGCGTGTGTGTGTAA
Upstream 100 bases:
>100_bases AAGGCTTGTGTTTTTTCTCGATTTTTTGTTGCTGTTGTTCTTGAATCGCATTGATCGCTGCGGTTGATGCTTTCTATAGT TTTTTATGTGGAGGTATTTT
Downstream 100 bases:
>100_bases GTCATTATGGATTTCTTTAAATTTAATTATTAGGTGATTTATGTCTATTGTGAGAGTGAAAGATAATGTTCTTATTGAGC GTTCTGTAAATACTAAGACG
Product: replication initiation factor
Products: NA
Alternate protein names: Phage Replication Protein; Phage Replication Initiation Factor; Phage Replication Initiation Protein; Phage Replication Protein RstA; Replication Initiation Factor Family
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MSRRSSSSDSAVYVNFLERERRADVEKAARLYETRRDRVEPSYVFPAPSGEKRVGPNSNTGQKGVVGSYPVSIDYLTVVF SYARLAEAGYFDEPRFLLYLLFGLSVDDVIVGSHTSVRWHFYNSSASIIDSNGDLVGKIGWDGNADSYCISLTGSACRYI HDWSKVKRSLASLDARITRCDVAYDDYDGILGTVRHHEALAREHLAPAGGCLLFSSGGTPPRTRFLDDHGGGSGCTLYVG QRGHKQLCIYEKGKQLGVAESPWVRYEVRLYAKHAVIPFDLLEEPMRYLRGSYDYLCQLFSSVVVSPVSRIRTVVKHVEA TGEALVRWLRRQVGPALGVLRQALGCGFSDFIVDRVEREGLPSRFRRICRGGDLLAYLRETLIDCSVGVCV
Sequences:
>Translated_391_residues MSRRSSSSDSAVYVNFLERERRADVEKAARLYETRRDRVEPSYVFPAPSGEKRVGPNSNTGQKGVVGSYPVSIDYLTVVF SYARLAEAGYFDEPRFLLYLLFGLSVDDVIVGSHTSVRWHFYNSSASIIDSNGDLVGKIGWDGNADSYCISLTGSACRYI HDWSKVKRSLASLDARITRCDVAYDDYDGILGTVRHHEALAREHLAPAGGCLLFSSGGTPPRTRFLDDHGGGSGCTLYVG QRGHKQLCIYEKGKQLGVAESPWVRYEVRLYAKHAVIPFDLLEEPMRYLRGSYDYLCQLFSSVVVSPVSRIRTVVKHVEA TGEALVRWLRRQVGPALGVLRQALGCGFSDFIVDRVEREGLPSRFRRICRGGDLLAYLRETLIDCSVGVCV >Mature_390_residues SRRSSSSDSAVYVNFLERERRADVEKAARLYETRRDRVEPSYVFPAPSGEKRVGPNSNTGQKGVVGSYPVSIDYLTVVFS YARLAEAGYFDEPRFLLYLLFGLSVDDVIVGSHTSVRWHFYNSSASIIDSNGDLVGKIGWDGNADSYCISLTGSACRYIH DWSKVKRSLASLDARITRCDVAYDDYDGILGTVRHHEALAREHLAPAGGCLLFSSGGTPPRTRFLDDHGGGSGCTLYVGQ RGHKQLCIYEKGKQLGVAESPWVRYEVRLYAKHAVIPFDLLEEPMRYLRGSYDYLCQLFSSVVVSPVSRIRTVVKHVEAT GEALVRWLRRQVGPALGVLRQALGCGFSDFIVDRVEREGLPSRFRRICRGGDLLAYLRETLIDCSVGVCV
Specific function: Unknown
COG id: COG2946
COG function: function code L; Putative phage replication protein RstA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43563; Mature: 43432
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRSSSSDSAVYVNFLERERRADVEKAARLYETRRDRVEPSYVFPAPSGEKRVGPNSNT CCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC GQKGVVGSYPVSIDYLTVVFSYARLAEAGYFDEPRFLLYLLFGLSVDDVIVGSHTSVRWH CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEEE FYNSSASIIDSNGDLVGKIGWDGNADSYCISLTGSACRYIHDWSKVKRSLASLDARITRC EECCCCEEEECCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEE DVAYDDYDGILGTVRHHEALAREHLAPAGGCLLFSSGGTPPRTRFLDDHGGGSGCTLYVG EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEECCCCCCCCEEEEEE QRGHKQLCIYEKGKQLGVAESPWVRYEVRLYAKHAVIPFDLLEEPMRYLRGSYDYLCQLF CCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHH SSVVVSPVSRIRTVVKHVEATGEALVRWLRRQVGPALGVLRQALGCGFSDFIVDRVEREG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCC LPSRFRRICRGGDLLAYLRETLIDCSVGVCV CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SRRSSSSDSAVYVNFLERERRADVEKAARLYETRRDRVEPSYVFPAPSGEKRVGPNSNT CCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC GQKGVVGSYPVSIDYLTVVFSYARLAEAGYFDEPRFLLYLLFGLSVDDVIVGSHTSVRWH CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEEE FYNSSASIIDSNGDLVGKIGWDGNADSYCISLTGSACRYIHDWSKVKRSLASLDARITRC EECCCCEEEECCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEE DVAYDDYDGILGTVRHHEALAREHLAPAGGCLLFSSGGTPPRTRFLDDHGGGSGCTLYVG EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEECCCCCCCCEEEEEE QRGHKQLCIYEKGKQLGVAESPWVRYEVRLYAKHAVIPFDLLEEPMRYLRGSYDYLCQLF CCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHH SSVVVSPVSRIRTVVKHVEATGEALVRWLRRQVGPALGVLRQALGCGFSDFIVDRVEREG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCC LPSRFRRICRGGDLLAYLRETLIDCSVGVCV CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA