| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is ppiB [H]
Identifier: 182681047
GI number: 182681047
Start: 588182
End: 588676
Strand: Reverse
Name: ppiB [H]
Synonym: XfasM23_0486
Alternate gene names: 182681047
Gene position: 588676-588182 (Counterclockwise)
Preceding gene: 182681056
Following gene: 182681046
Centisome position: 23.22
GC content: 49.29
Gene sequence:
>495_bases ATGCACCTCATTGCTCATTTAGACACTGTCCGAGGGCCGATCAAAATCAATCTATTCGCTGACAAAACCCCATTAACCGT CGCTAATTTCGTTAATTTGGCCAAGCGCGGCTTCTACGACGGTTTAAACTTCCATCGTGTGATCGCCAATTTCATGATTC AGGGCGGCTGCCCCGAAGGTTCCGGCCACGGTGGTCCAGGCTACCACTTTGAAGATGAAACCAATAATGGCATGTGCCAC GAACGCGGCTCACTGTCGATGGCCAATGCAGGCCCTAATACGAATGGCAGCCAGTTTTTCATCACTCATGTAGCGACGCC ATGGCTAGATGGCAAACACACGGTATTTGGGAAAGTACTTGATGGCCAGGATGTGGTGGATGCAATCGCCCAAGGCGACA TCATCAACAAAATCACAATTGAAGGCGATACTGATGGCGTACTAGCCCTTAAAACTGATCGCATCATCGAATGGAATTCG ATCCTTGCCACCTAA
Upstream 100 bases:
>100_bases CATTAACGTGAAGAAAGAAGGGAGTAGCAATAAGCTGCGTGGGTGTATTCTACGCCTTTATTCATGCGAAAATTCTTAAT TTTTTAAGGAAAAGATCTTC
Downstream 100 bases:
>100_bases TCTAACATTTTTCTCACCAAAAATAGCCTTGTTCCACTTGTTGTATGAACATGCTATCCAACACTTCATTGCCGTTTTCC CACAACACCCCACCAGTTTT
Product: peptidylprolyl isomerase
Products: NA
Alternate protein names: PPIase; Rotamase [H]
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MHLIAHLDTVRGPIKINLFADKTPLTVANFVNLAKRGFYDGLNFHRVIANFMIQGGCPEGSGHGGPGYHFEDETNNGMCH ERGSLSMANAGPNTNGSQFFITHVATPWLDGKHTVFGKVLDGQDVVDAIAQGDIINKITIEGDTDGVLALKTDRIIEWNS ILAT
Sequences:
>Translated_164_residues MHLIAHLDTVRGPIKINLFADKTPLTVANFVNLAKRGFYDGLNFHRVIANFMIQGGCPEGSGHGGPGYHFEDETNNGMCH ERGSLSMANAGPNTNGSQFFITHVATPWLDGKHTVFGKVLDGQDVVDAIAQGDIINKITIEGDTDGVLALKTDRIIEWNS ILAT >Mature_164_residues MHLIAHLDTVRGPIKINLFADKTPLTVANFVNLAKRGFYDGLNFHRVIANFMIQGGCPEGSGHGGPGYHFEDETNNGMCH ERGSLSMANAGPNTNGSQFFITHVATPWLDGKHTVFGKVLDGQDVVDAIAQGDIINKITIEGDTDGVLALKTDRIIEWNS ILAT
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]
COG id: COG0652
COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase cyclophilin-type domain [H]
Homologues:
Organism=Homo sapiens, GI24308049, Length=130, Percent_Identity=53.0769230769231, Blast_Score=132, Evalue=1e-31, Organism=Homo sapiens, GI7706339, Length=128, Percent_Identity=50, Blast_Score=125, Evalue=1e-29, Organism=Homo sapiens, GI19557636, Length=135, Percent_Identity=48.8888888888889, Blast_Score=121, Evalue=3e-28, Organism=Homo sapiens, GI4758950, Length=125, Percent_Identity=52.8, Blast_Score=109, Evalue=1e-24, Organism=Homo sapiens, GI10863927, Length=141, Percent_Identity=49.645390070922, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI4505991, Length=125, Percent_Identity=54.4, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI22547212, Length=127, Percent_Identity=50.3937007874016, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI7657473, Length=127, Percent_Identity=50.3937007874016, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI22547215, Length=127, Percent_Identity=50.3937007874016, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI256017253, Length=124, Percent_Identity=51.6129032258064, Blast_Score=104, Evalue=3e-23, Organism=Homo sapiens, GI221139811, Length=124, Percent_Identity=51.6129032258064, Blast_Score=104, Evalue=3e-23, Organism=Homo sapiens, GI256017251, Length=124, Percent_Identity=51.6129032258064, Blast_Score=104, Evalue=3e-23, Organism=Homo sapiens, GI310127646, Length=141, Percent_Identity=44.6808510638298, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI310114371, Length=141, Percent_Identity=44.6808510638298, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI310119221, Length=141, Percent_Identity=44.6808510638298, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI178057341, Length=125, Percent_Identity=50.4, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI310129267, Length=128, Percent_Identity=50, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI310120620, Length=128, Percent_Identity=50, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI6631100, Length=134, Percent_Identity=47.0149253731343, Blast_Score=100, Evalue=9e-22, Organism=Homo sapiens, GI209417936, Length=127, Percent_Identity=48.8188976377953, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI30102944, Length=127, Percent_Identity=48.8188976377953, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI219842199, Length=127, Percent_Identity=48.8188976377953, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI4826932, Length=154, Percent_Identity=42.8571428571429, Blast_Score=98, Evalue=3e-21, Organism=Homo sapiens, GI5031987, Length=125, Percent_Identity=50.4, Blast_Score=98, Evalue=4e-21, Organism=Homo sapiens, GI310110104, Length=128, Percent_Identity=49.21875, Blast_Score=97, Evalue=6e-21, Organism=Homo sapiens, GI42560244, Length=133, Percent_Identity=45.1127819548872, Blast_Score=97, Evalue=8e-21, Organism=Homo sapiens, GI5174637, Length=130, Percent_Identity=50, Blast_Score=96, Evalue=1e-20, Organism=Homo sapiens, GI45439316, Length=130, Percent_Identity=47.6923076923077, Blast_Score=96, Evalue=1e-20, Organism=Homo sapiens, GI5454154, Length=130, Percent_Identity=46.9230769230769, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI303305009, Length=126, Percent_Identity=49.2063492063492, Blast_Score=95, Evalue=2e-20, Organism=Homo sapiens, GI169164185, Length=141, Percent_Identity=45.3900709219858, Blast_Score=95, Evalue=4e-20, Organism=Homo sapiens, GI169163623, Length=141, Percent_Identity=45.3900709219858, Blast_Score=95, Evalue=4e-20, Organism=Homo sapiens, GI169163387, Length=141, Percent_Identity=45.3900709219858, Blast_Score=94, Evalue=4e-20, Organism=Homo sapiens, GI64276486, Length=117, Percent_Identity=43.5897435897436, Blast_Score=94, Evalue=7e-20, Organism=Homo sapiens, GI310127745, Length=140, Percent_Identity=43.5714285714286, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI310119290, Length=140, Percent_Identity=43.5714285714286, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI310114540, Length=140, Percent_Identity=43.5714285714286, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI310132444, Length=143, Percent_Identity=42.6573426573427, Blast_Score=88, Evalue=3e-18, Organism=Homo sapiens, GI310113152, Length=143, Percent_Identity=42.6573426573427, Blast_Score=88, Evalue=3e-18, Organism=Homo sapiens, GI150418007, Length=141, Percent_Identity=42.5531914893617, Blast_Score=84, Evalue=6e-17, Organism=Homo sapiens, GI20911035, Length=137, Percent_Identity=35.7664233576642, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI239751853, Length=143, Percent_Identity=42.6573426573427, Blast_Score=81, Evalue=3e-16, Organism=Homo sapiens, GI113428306, Length=143, Percent_Identity=42.6573426573427, Blast_Score=81, Evalue=3e-16, Organism=Homo sapiens, GI169214050, Length=143, Percent_Identity=42.6573426573427, Blast_Score=81, Evalue=3e-16, Organism=Homo sapiens, GI14277126, Length=141, Percent_Identity=41.1347517730496, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27735045, Length=132, Percent_Identity=38.6363636363636, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI1789763, Length=132, Percent_Identity=40.9090909090909, Blast_Score=87, Evalue=4e-19, Organism=Escherichia coli, GI1786736, Length=131, Percent_Identity=41.2213740458015, Blast_Score=86, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17539496, Length=134, Percent_Identity=52.2388059701493, Blast_Score=128, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17532641, Length=124, Percent_Identity=49.1935483870968, Blast_Score=123, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17506311, Length=132, Percent_Identity=52.2727272727273, Blast_Score=119, Evalue=5e-28, Organism=Caenorhabditis elegans, GI17506307, Length=127, Percent_Identity=55.1181102362205, Blast_Score=119, Evalue=5e-28, Organism=Caenorhabditis elegans, GI17552780, Length=125, Percent_Identity=56.8, Blast_Score=119, Evalue=8e-28, Organism=Caenorhabditis elegans, GI71980594, Length=135, Percent_Identity=45.9259259259259, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71980590, Length=135, Percent_Identity=45.9259259259259, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17559074, Length=132, Percent_Identity=48.4848484848485, Blast_Score=103, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17552782, Length=132, Percent_Identity=47.7272727272727, Blast_Score=101, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17539498, Length=127, Percent_Identity=48.8188976377953, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71997782, Length=119, Percent_Identity=44.5378151260504, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17565860, Length=134, Percent_Identity=47.0149253731343, Blast_Score=99, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17566266, Length=132, Percent_Identity=46.2121212121212, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17552784, Length=134, Percent_Identity=46.2686567164179, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17551282, Length=132, Percent_Identity=48.4848484848485, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17551284, Length=132, Percent_Identity=48.4848484848485, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17532643, Length=131, Percent_Identity=47.3282442748092, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI32563659, Length=135, Percent_Identity=35.5555555555556, Blast_Score=80, Evalue=5e-16, Organism=Caenorhabditis elegans, GI115533296, Length=136, Percent_Identity=36.0294117647059, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320510, Length=135, Percent_Identity=52.5925925925926, Blast_Score=110, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320359, Length=126, Percent_Identity=53.968253968254, Blast_Score=108, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6323562, Length=142, Percent_Identity=48.5915492957746, Blast_Score=107, Evalue=6e-25, Organism=Saccharomyces cerevisiae, GI6321848, Length=172, Percent_Identity=42.4418604651163, Blast_Score=104, Evalue=6e-24, Organism=Saccharomyces cerevisiae, GI6323246, Length=136, Percent_Identity=44.8529411764706, Blast_Score=89, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322492, Length=175, Percent_Identity=36.5714285714286, Blast_Score=79, Evalue=3e-16, Organism=Drosophila melanogaster, GI19922376, Length=135, Percent_Identity=48.8888888888889, Blast_Score=135, Evalue=1e-32, Organism=Drosophila melanogaster, GI17986117, Length=127, Percent_Identity=51.1811023622047, Blast_Score=126, Evalue=5e-30, Organism=Drosophila melanogaster, GI19922912, Length=124, Percent_Identity=54.8387096774194, Blast_Score=112, Evalue=8e-26, Organism=Drosophila melanogaster, GI20130249, Length=125, Percent_Identity=52, Blast_Score=109, Evalue=9e-25, Organism=Drosophila melanogaster, GI24652460, Length=135, Percent_Identity=42.962962962963, Blast_Score=104, Evalue=2e-23, Organism=Drosophila melanogaster, GI17136360, Length=136, Percent_Identity=46.3235294117647, Blast_Score=100, Evalue=6e-22, Organism=Drosophila melanogaster, GI21357249, Length=117, Percent_Identity=43.5897435897436, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI45549139, Length=125, Percent_Identity=51.2, Blast_Score=98, Evalue=2e-21, Organism=Drosophila melanogaster, GI17647301, Length=127, Percent_Identity=47.244094488189, Blast_Score=95, Evalue=2e-20, Organism=Drosophila melanogaster, GI24664125, Length=142, Percent_Identity=45.7746478873239, Blast_Score=95, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357783, Length=142, Percent_Identity=45.7746478873239, Blast_Score=95, Evalue=2e-20, Organism=Drosophila melanogaster, GI24650807, Length=130, Percent_Identity=44.6153846153846, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI24586038, Length=138, Percent_Identity=43.4782608695652, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI21355677, Length=132, Percent_Identity=34.0909090909091, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015891 - InterPro: IPR020892 - InterPro: IPR002130 [H]
Pfam domain/function: PF00160 Pro_isomerase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 17744; Mature: 17744
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS00170 CSA_PPIASE_1 ; PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLIAHLDTVRGPIKINLFADKTPLTVANFVNLAKRGFYDGLNFHRVIANFMIQGGCPEG CCEEEEHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCC SGHGGPGYHFEDETNNGMCHERGSLSMANAGPNTNGSQFFITHVATPWLDGKHTVFGKVL CCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE DGQDVVDAIAQGDIINKITIEGDTDGVLALKTDRIIEWNSILAT CCHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCEEECCCEECC >Mature Secondary Structure MHLIAHLDTVRGPIKINLFADKTPLTVANFVNLAKRGFYDGLNFHRVIANFMIQGGCPEG CCEEEEHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCC SGHGGPGYHFEDETNNGMCHERGSLSMANAGPNTNGSQFFITHVATPWLDGKHTVFGKVL CCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE DGQDVVDAIAQGDIINKITIEGDTDGVLALKTDRIIEWNSILAT CCHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9317025; 9665876 [H]