Click here to switch to the map view.

The map label for this gene is yedU [C]

Identifier: 182680980

GI number: 182680980

Start: 523367

End: 523996

Strand: Direct

Name: yedU [C]

Synonym: XfasM23_0419

Alternate gene names: 182680980

Gene position: 523367-523996 (Clockwise)

Preceding gene: 182680979

Following gene: 182680981

Centisome position: 20.64

GC content: 53.81

Gene sequence:

>630_bases
GTGACCAGTCATCTGATCCGCGGCGATAGCGGTGAGCCTACAGGGTTCGCGATGGTTGAACTCACCCATCCGCTTGAGGT
CTTTGAAGCAGCGGGTATCCCGGTGGAGATTGCTTCCATCCGTGGTGGCCACCCACCGATCGACTTCTTTGATCTTTCCG
ACCCGGTCAATGATCGTTTTTGGAAGAACAAAGCGGTTCCGTCGCTCGCTGACTCATTCGTTCTCGGTGACCTTGATCCG
TTGCGTTACTCGGCGGTCTTTTTTGTTGGTGGTCACGGTACGATGTGGGACTTTGCTGACAGTCTGGCCGTGCAGAACGT
AGTCCGTGGTATTTGGGAAAGTGACGGTATTGTTTCTGCGGTTTGTCATGGTCCTGCTGCTCTGGTGAATGCAATACTCT
CTGACGGCAGTTACCTCGTCGCTGGCAAGGAGGAGACTGAGGTTAAGTACGCTAATGTTGTGCCTTATTTGTTGGCTACC
ACGCTGAAGCAGCGTGGTGCGCTACATCAGTCTGCTCCTAATTGGGTTGAAAATGTCGTGGTCGATGGTCGCCTTATCAC
CGGCCAGAACCCAGCTTCGGCGTACGGTGTCGGCCAACGTGTAGTTGACCAGCTCAAGGCCAGTATTTGA

Upstream 100 bases:

>100_bases
GAAAAGTGACGTTAAGTATCGTTTCGTCATTGACATGACTTCGCTGACATCATCAGGAGCTTGAAAACATGACCAATATC
ATCAACCCATCCTGTGTGTA

Downstream 100 bases:

>100_bases
CGTCAAAGTTAAACGTTGTCGGCGTGAGGACTCATTTTATTGAGGCATCCACTCGGTCTGTTCTTGCATGTCTGCGGCGT
GTTCTCTCGTGGCGGCTTTT

Product: ThiJ/PfpI domain-containing protein

Products: NA

Alternate protein names: ThiJ/PfpI Family Protein; ThiJ/PfpI Domain Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase-Like Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; C56 Family Peptidase; Intracellular Protease/Amidase-Like; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Amidotransferase; Protease I; Transcriptional Regulator Fis Family; Intracellular Protease Amidase; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; ThiJ/PfpI Protein; Regulatory Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator; NonF Protein; ThiJ Protein

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTSHLIRGDSGEPTGFAMVELTHPLEVFEAAGIPVEIASIRGGHPPIDFFDLSDPVNDRFWKNKAVPSLADSFVLGDLDP
LRYSAVFFVGGHGTMWDFADSLAVQNVVRGIWESDGIVSAVCHGPAALVNAILSDGSYLVAGKEETEVKYANVVPYLLAT
TLKQRGALHQSAPNWVENVVVDGRLITGQNPASAYGVGQRVVDQLKASI

Sequences:

>Translated_209_residues
MTSHLIRGDSGEPTGFAMVELTHPLEVFEAAGIPVEIASIRGGHPPIDFFDLSDPVNDRFWKNKAVPSLADSFVLGDLDP
LRYSAVFFVGGHGTMWDFADSLAVQNVVRGIWESDGIVSAVCHGPAALVNAILSDGSYLVAGKEETEVKYANVVPYLLAT
TLKQRGALHQSAPNWVENVVVDGRLITGQNPASAYGVGQRVVDQLKASI
>Mature_208_residues
TSHLIRGDSGEPTGFAMVELTHPLEVFEAAGIPVEIASIRGGHPPIDFFDLSDPVNDRFWKNKAVPSLADSFVLGDLDPL
RYSAVFFVGGHGTMWDFADSLAVQNVVRGIWESDGIVSAVCHGPAALVNAILSDGSYLVAGKEETEVKYANVVPYLLATT
LKQRGALHQSAPNWVENVVVDGRLITGQNPASAYGVGQRVVDQLKASI

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320742, Length=218, Percent_Identity=29.8165137614679, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323984, Length=215, Percent_Identity=24.1860465116279, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324967, Length=215, Percent_Identity=24.1860465116279, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324975, Length=215, Percent_Identity=24.1860465116279, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22387; Mature: 22255

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHLIRGDSGEPTGFAMVELTHPLEVFEAAGIPVEIASIRGGHPPIDFFDLSDPVNDRF
CCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCHHH
WKNKAVPSLADSFVLGDLDPLRYSAVFFVGGHGTMWDFADSLAVQNVVRGIWESDGIVSA
HCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEH
VCHGPAALVNAILSDGSYLVAGKEETEVKYANVVPYLLATTLKQRGALHQSAPNWVENVV
HHCCHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHE
VDGRLITGQNPASAYGVGQRVVDQLKASI
ECCEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSHLIRGDSGEPTGFAMVELTHPLEVFEAAGIPVEIASIRGGHPPIDFFDLSDPVNDRF
CCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCHHH
WKNKAVPSLADSFVLGDLDPLRYSAVFFVGGHGTMWDFADSLAVQNVVRGIWESDGIVSA
HCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEH
VCHGPAALVNAILSDGSYLVAGKEETEVKYANVVPYLLATTLKQRGALHQSAPNWVENVV
HHCCHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHE
VDGRLITGQNPASAYGVGQRVVDQLKASI
ECCEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA