Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 182680971

GI number: 182680971

Start: 510526

End: 512019

Strand: Direct

Name: rng [H]

Synonym: XfasM23_0409

Alternate gene names: 182680971

Gene position: 510526-512019 (Clockwise)

Preceding gene: 182680970

Following gene: 182680972

Centisome position: 20.13

GC content: 52.21

Gene sequence:

>1494_bases
ATGTCAGAGGAGATCTTAGTTAACGTGACTTTTGGTGAAACGCGTGTGGCAGTCGTTGAAAACGGTTTGCTTCAGGAGTT
GCACATTGAGCGCGATGGGTGTCGTGGTGTGGTTGGGAATATCTACAAAGGTAGGGTGCAGCGCGTCATGCCTGGGATGC
AGGCGGCTTTTGTTGATGTGGGAATGGAACGTACCGCTTTTCTACACGTTAACGATGTGGTGCGGTCTGCGCCTGCTGAT
TCCAGTGTGATTGATACTGATGAAACGACAGTGCCGCCTTTATCTGAGATACCAATTGTTGAGTTACTGCGTGATGGGCA
GGAGTTGATGGTTCAGGTGCTTAAGGAGCCGATCGGTACGAAAGGTGCGCGTTTGACCACTCAGATCAGCATTCCTTCGC
GTTATTTAGTGTTGCTGCCGCAGTCTAAGATGGTTGGGGTTTCGCTCCGGATTGAAGATGAAGCAGAGCGTGCGCGGTTG
AAAGCAGTCGTGACGGATCTGGCGGCGCAGTACGGTGATTACGGTTATATCGTCCGTACCAATGCTGAGGGCCAGTCTGC
TGATGTGCTTGTTGAGGATATTGCCTATTTGTCGCGGTTGTGGGGTGTGGTGGAGCGGCGTGGGCGTGAATTGCCTGTGT
GCAGTCTCCTCTATGAGGATTTGAGTCTTTCGTTGCGTTCGGTGCGCGATCTAATCCGTAAAGATGTGGAAAAGATCAAG
GTGGACTCGAAGGAGGCTTTCGCCCAGTTGCAGGGATTTGTGACGAAATATATGCCGGTGCTGGCGGATAAGTTGGAGTT
GTATGTCGGCGATCATCCGATTTTCGATCTTTATGGTGTGGAGGATGAGATCGGTCGCGCTTTGGATAGACAAATCCCTC
TTAAATCAGGGGGGTATCTTGTCATTGAGCAAACTGAGGCGATGACCACGGTGGATGTGAATACCGGTTCCTTTGTCGGT
AAGCGTACTCTGGAGGAGACGGTGTTTCGTACTAATCTGGAGGCGGCGCAGGCGTTGGCACGTCAACTGCGGTTGCGTAA
TCTTGGCGGGATTATCGTCATTGATTTTATCGACATGCAAGACGCCGAACACCGTTGCCAAGTGTTGCGTGTGTTGGAGA
AAGCATTGATACGTGACCATGCCAAGACCACGGTGTACGATTTTTCGCCGCTGGGTTTGGTTGAGATGACGCGCAAACGT
ACTGTGGAAAGTTTGCAGAGGCAGTTGTCTGAGACGTGCCAGACATGCGGGGGGCGTGGCACGATCAAAACGGTCGAGAC
GGTGACCTACGAGATATTCCGTGATATCACCCGTGCAGTGCGTCAGTTCGATGCGGTGCGGTTGTTGGTGATTGCCTCAC
CCAATGTGGTGTCCAGGATGACGGATGAGGAGTCTGCTGCGGTTGCTGAGTTGGAGGCGGTGCTTGGCAAAGCGATTCGG
TTTCAGGCTGATCCGCACTATTTGCAGGAGCAGTATGAGGTGGTGTTGTTGTGA

Upstream 100 bases:

>100_bases
GGAGTGTTTCGTCAGCCGTTTGGTCGGTAGTTATTCTGGGGTGATGGGGTTACCGCTACAGCAAACCGCTCAGTTGCTGG
CTACGTTCGAGGAGAGTTAG

Downstream 100 bases:

>100_bases
ATGATTTGGTGCCATGTGTGGTGTACATGGTGGATATGTGGTTGTGGATGTTCATTATGCGTGTGTCAAGGTGGGTATTT
GTTTCACGGCAGATGGATAT

Product: ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MSEEILVNVTFGETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVDVGMERTAFLHVNDVVRSAPAD
SSVIDTDETTVPPLSEIPIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLPQSKMVGVSLRIEDEAERARL
KAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSLLYEDLSLSLRSVRDLIRKDVEKIK
VDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFDLYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVG
KRTLEETVFRTNLEAAQALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEMTRKR
TVESLQRQLSETCQTCGGRGTIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNVVSRMTDEESAAVAELEAVLGKAIR
FQADPHYLQEQYEVVLL

Sequences:

>Translated_497_residues
MSEEILVNVTFGETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVDVGMERTAFLHVNDVVRSAPAD
SSVIDTDETTVPPLSEIPIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLPQSKMVGVSLRIEDEAERARL
KAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSLLYEDLSLSLRSVRDLIRKDVEKIK
VDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFDLYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVG
KRTLEETVFRTNLEAAQALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEMTRKR
TVESLQRQLSETCQTCGGRGTIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNVVSRMTDEESAAVAELEAVLGKAIR
FQADPHYLQEQYEVVLL
>Mature_496_residues
SEEILVNVTFGETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVDVGMERTAFLHVNDVVRSAPADS
SVIDTDETTVPPLSEIPIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLPQSKMVGVSLRIEDEAERARLK
AVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSLLYEDLSLSLRSVRDLIRKDVEKIKV
DSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFDLYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGK
RTLEETVFRTNLEAAQALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEMTRKRT
VESLQRQLSETCQTCGGRGTIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNVVSRMTDEESAAVAELEAVLGKAIRF
QADPHYLQEQYEVVLL

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=499, Percent_Identity=54.1082164328657, Blast_Score=506, Evalue=1e-144,
Organism=Escherichia coli, GI1787325, Length=472, Percent_Identity=36.0169491525424, Blast_Score=281, Evalue=7e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 55587; Mature: 55456

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEILVNVTFGETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVDV
CCCCEEEEEEECCEEEEHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHC
GMERTAFLHVNDVVRSAPADSSVIDTDETTVPPLSEIPIVELLRDGQELMVQVLKEPIGT
CCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCC
KGARLTTQISIPSRYLVLLPQSKMVGVSLRIEDEAERARLKAVVTDLAAQYGDYGYIVRT
CCCEEEEEEECCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEE
NAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSLLYEDLSLSLRSVRDLIRKDVEKIK
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFDLYGVEDEIGRALDRQIPLKSGGYL
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCEE
VIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAAQALARQLRLRNLGGIIVIDFIDMQ
EEEECCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
DAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEMTRKRTVESLQRQLSETCQTCGGRG
CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNVVSRMTDEESAAVAELEAVLGKAIR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHE
FQADPHYLQEQYEVVLL
ECCCHHHHHCCCCEEEC
>Mature Secondary Structure 
SEEILVNVTFGETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVDV
CCCEEEEEEECCEEEEHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHC
GMERTAFLHVNDVVRSAPADSSVIDTDETTVPPLSEIPIVELLRDGQELMVQVLKEPIGT
CCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCC
KGARLTTQISIPSRYLVLLPQSKMVGVSLRIEDEAERARLKAVVTDLAAQYGDYGYIVRT
CCCEEEEEEECCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEE
NAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSLLYEDLSLSLRSVRDLIRKDVEKIK
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFDLYGVEDEIGRALDRQIPLKSGGYL
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCEE
VIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAAQALARQLRLRNLGGIIVIDFIDMQ
EEEECCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
DAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEMTRKRTVESLQRQLSETCQTCGGRG
CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNVVSRMTDEESAAVAELEAVLGKAIR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHE
FQADPHYLQEQYEVVLL
ECCCHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]