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The map label for this gene is dapB [H]

Identifier: 182680953

GI number: 182680953

Start: 483541

End: 484251

Strand: Direct

Name: dapB [H]

Synonym: XfasM23_0391

Alternate gene names: 182680953

Gene position: 483541-484251 (Clockwise)

Preceding gene: 182680952

Following gene: 182680954

Centisome position: 19.07

GC content: 56.96

Gene sequence:

>711_bases
GTGGATTCTTTTCTTAGACTTCTTATTCATGGTGCTTCCGGGCGCATGGGCCAGTCGCTGTTGCGACTGGCCTCAGAAGA
CCCTTCGTTTCAGGTGACTGCTGCGGTGGTCGGGAATGCACCGCATCGCCATGTGAGCGATGGTGTTCCATTTTTTGCGG
CTGCTGAATTGGCAGCTGTGCCAGCGTTTGATGTTGCGATTGATTTCAGTTTGCCACAGGGGTTTTCGTCGTTGCTGGCA
TTGTGTGTAGCGCGCGCTGTGCCGCTGGTCTCTGGGACGACTGGTCTTGATTCGAGGCAGCATGAGGCTTTGGTCATGGC
AGGGGCGCGGATTCCTCTGGTGTGGGGGTCCAATTTCAGTGTGGGTATGGCGGTGTTGGTGAATTTGGTTGAACGTGCCG
GTGATGCGTTGTCAGGTTGGGATTGCGACATCGTCGAGTCGCATCACGTCCACAAGCAGGATGCTCCGTCTGGGAGTGCG
CTGACGTTAGGTGAGGCGGTTGCCTGCAAGGGGATCGCGCCGCGCTATACAAGCTTGCGTGCCGGCGACATTATTGGTGA
CCATCTGGTGCAGTTTACGGGCTTGGGTGAGCGCATTGAGTTAGTACACCGTGCCAGCAATCGTGATGTTTTTGCACGTG
GTGCGTTGTCCGTAGCCCGGCGTGTGGTGGGGCGTGTGCCTGGGTGTTATCGGGTGCGTGACTTGATGTGA

Upstream 100 bases:

>100_bases
AACCGTCAGGGCTTTTGATTCGCACTGTGTTTGAGGGGAGTCGTTGTGTTGGACACGGTGCTATCTTGTAGGGTGTTCAT
AGTGTGGTTGGGTTGTTGCA

Downstream 100 bases:

>100_bases
GTTGATACTCGGCTTTCAGCTTCCGTGTGTTGTCTGTGTGGTGATGTTGGGCTGGTACGGGGCGATGCTTGCCGTTAGAA
TAGCACTCTGCCCGAATCTA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDSFLRLLIHGASGRMGQSLLRLASEDPSFQVTAAVVGNAPHRHVSDGVPFFAAAELAAVPAFDVAIDFSLPQGFSSLLA
LCVARAVPLVSGTTGLDSRQHEALVMAGARIPLVWGSNFSVGMAVLVNLVERAGDALSGWDCDIVESHHVHKQDAPSGSA
LTLGEAVACKGIAPRYTSLRAGDIIGDHLVQFTGLGERIELVHRASNRDVFARGALSVARRVVGRVPGCYRVRDLM

Sequences:

>Translated_236_residues
MDSFLRLLIHGASGRMGQSLLRLASEDPSFQVTAAVVGNAPHRHVSDGVPFFAAAELAAVPAFDVAIDFSLPQGFSSLLA
LCVARAVPLVSGTTGLDSRQHEALVMAGARIPLVWGSNFSVGMAVLVNLVERAGDALSGWDCDIVESHHVHKQDAPSGSA
LTLGEAVACKGIAPRYTSLRAGDIIGDHLVQFTGLGERIELVHRASNRDVFARGALSVARRVVGRVPGCYRVRDLM
>Mature_236_residues
MDSFLRLLIHGASGRMGQSLLRLASEDPSFQVTAAVVGNAPHRHVSDGVPFFAAAELAAVPAFDVAIDFSLPQGFSSLLA
LCVARAVPLVSGTTGLDSRQHEALVMAGARIPLVWGSNFSVGMAVLVNLVERAGDALSGWDCDIVESHHVHKQDAPSGSA
LTLGEAVACKGIAPRYTSLRAGDIIGDHLVQFTGLGERIELVHRASNRDVFARGALSVARRVVGRVPGCYRVRDLM

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=266, Percent_Identity=34.9624060150376, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 24944; Mature: 24944

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFLRLLIHGASGRMGQSLLRLASEDPSFQVTAAVVGNAPHRHVSDGVPFFAAAELAAV
CCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHC
PAFDVAIDFSLPQGFSSLLALCVARAVPLVSGTTGLDSRQHEALVMAGARIPLVWGSNFS
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEEECCCCC
VGMAVLVNLVERAGDALSGWDCDIVESHHVHKQDAPSGSALTLGEAVACKGIAPRYTSLR
HHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCC
AGDIIGDHLVQFTGLGERIELVHRASNRDVFARGALSVARRVVGRVPGCYRVRDLM
CCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MDSFLRLLIHGASGRMGQSLLRLASEDPSFQVTAAVVGNAPHRHVSDGVPFFAAAELAAV
CCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHC
PAFDVAIDFSLPQGFSSLLALCVARAVPLVSGTTGLDSRQHEALVMAGARIPLVWGSNFS
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEEECCCCC
VGMAVLVNLVERAGDALSGWDCDIVESHHVHKQDAPSGSALTLGEAVACKGIAPRYTSLR
HHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCC
AGDIIGDHLVQFTGLGERIELVHRASNRDVFARGALSVARRVVGRVPGCYRVRDLM
CCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]