Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is 182680918
Identifier: 182680918
GI number: 182680918
Start: 454489
End: 455460
Strand: Reverse
Name: 182680918
Synonym: XfasM23_0356
Alternate gene names: NA
Gene position: 455460-454489 (Counterclockwise)
Preceding gene: 182680919
Following gene: 182680917
Centisome position: 17.96
GC content: 59.57
Gene sequence:
>972_bases ATGACCCCACTCCAAATCACCATCACCCCCCAGGGCCGCGCCGCCCTAGTGAACGCCCAACATCATGGCACCGTCCCCGT GCGGCTGGCCTCTGTCGGCCTGACCGCACAACACTTTGACCCCACCGCGGCAACGATGCCTGATGAATCCAAACGCCTGA CCACCTTCTCAGGCGGCGTGGTGGCCGCAGACACCATTCACATCACTATCCGCGATGCAACTAGCGACCAGTACGACGTC CGCGGCTTTGGCGTCTACCTGGATGATGGCACCTTATTTGCCACCTACTCCCAACAGGACATCATTCTCAGCAAATCCGC ATCGGCCATGCTACTGCTGGCCATTGATGTTCGGTTCGTAGATACCGATGCGACTCAACTCACCTTCGGTGAAACCTCCT GGAACAACCCACCGGCGACACAGACAGTGGCAGGCGTGCTCACCTTGTCCAGCAACGCCCAAGCCATCGCGGGCCTGGAG GATCGCAGCGCCATACCGCCTACCGCATTGAAAGCCACCCTGGATCACCGCCTAGGCGAAGCCGCCCCTTCCGACTACGC CAAAACACTGCTGGCCAGCGCCGATGCGCCCACCCTCCGCCACCTGCTGGGCCTAGGCGATGCTGCCGTGATGGACACCG GATCAGGAAAAAACTTGGACGCAGATTTACTTGACGGCTATCACGGCACCTACTACCTACAATGGAGAAACCTCCAGAAC ACACCACAGACCTATCCACCGAGTGCCCACCAGCACGCCAGCAGCGATATCCCAGAACTGGCCTCGCAACTAGATACTCT GGTGAAAAAAACAGGAAGCCTCATGACAGGCTCGCTCCAATCCCAAGGCACCCTGATTGGTGACTCCCACCGGAACCACA CTCGGTGCCATGCTATCCACAATGGCTGCCGAACATGGCATGACCTGGGCGATCTCCCCGTCGCTCACAGGCGTCGCGCT ACCCCACATTGA
Upstream 100 bases:
>100_bases ACCCAGGGCGTGCACACCATCGGACAGATTGGCCTGCTGGGTGGCGCACAGATCACCGCGTACCGACGCCTACACCTCAC CCAGGCCGCATGAGGATGTT
Downstream 100 bases:
>100_bases TCAGACAGAAGAATCAGATATCAACGTCCTGCTACGGCTAGCACAGCGTTACGATGCGATTGCTAAACCTGCCGGAGGTC GACTGATCTTTGCCAAACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDV RGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLE DRSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDSHRNHTRCHAIHNGCRTWHDLGDLPVAHRRRA TPH
Sequences:
>Translated_323_residues MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDV RGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLE DRSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDSHRNHTRCHAIHNGCRTWHDLGDLPVAHRRRA TPH >Mature_322_residues TPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDVR GFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLED RSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQNT PQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDSHRNHTRCHAIHNGCRTWHDLGDLPVAHRRRAT PH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34570; Mature: 34439
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGV CCCEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCE VAADTIHITIRDATSDQYDVRGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFV EEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEECCCEEEEECCCCEEEEEEEEEEEE DTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLEDRSAIPPTALKATLDHRLGE ECCCCEEEECCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCC AAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCEEEEEECCCCC TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDSHRNHTRCHAIH CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCCCHHHHHHH NGCRTWHDLGDLPVAHRRRATPH HHHHHHHHCCCCCHHHCCCCCCC >Mature Secondary Structure TPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGV CCEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCE VAADTIHITIRDATSDQYDVRGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFV EEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEECCCEEEEECCCCEEEEEEEEEEEE DTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLEDRSAIPPTALKATLDHRLGE ECCCCEEEECCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCC AAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCEEEEEECCCCC TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDSHRNHTRCHAIH CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCCCHHHHHHH NGCRTWHDLGDLPVAHRRRATPH HHHHHHHHCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA