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The map label for this gene is ygfZ [C]

Identifier: 182680902

GI number: 182680902

Start: 439249

End: 440166

Strand: Reverse

Name: ygfZ [C]

Synonym: XfasM23_0340

Alternate gene names: 182680902

Gene position: 440166-439249 (Counterclockwise)

Preceding gene: 182680917

Following gene: 182680900

Centisome position: 17.36

GC content: 54.79

Gene sequence:

>918_bases
GTGCGGTCTATCCCTATAATCCTCTTCAAACCGGCTGCGATTCTATTCCTCTCCCCAGTGACTGACAACCTCCAAAGCAA
CGGACAGACACTCTTCCCACTGCCATCGTATGAAATGTTGCGCATTTCAGGCGCAGATACACTGAGTTTCGCACATGCCC
AATTCAGCAGCGATGCACAAGGCCTAGCCATCGGCAAGTGGCACTGGAGTGCTTGGCTAACTCCGAAAGGACGTGTCACT
GCATTGTTCGCCTTATATCGTCCTGCTGAAAACGAATTACTGTTGATCCTACCCGATGGAGAAGCAGTGATGATGGCCAC
CCAACTGCAACGCTATATCTTCCGACGTAAAGTACAGATCGCTGTGGAGCGGAATCTCATTACAACCGCAACTTACGACA
CACCGGTACACGCCACAGGTACGCAAGCAGCGCAACTTGACGGAATCACCGAATTGGACGTTAGCGGAATCACTCTGCCA
AGACGACTACTGCTAGTACCAGCTGCCGCCATGCCACCACGGGTCCCCGCATTCGAAGCGCAATGGCGCGCGGCAGATTT
ACGATTGGGGCTACCACGCCTGGACGCAAGCCAGCGCGATCAATGGACACCACAGCAGATCGGCCTAGACGGGTTGAATG
CCTACAGCATACGCAAAGGTTGCTATCCCGGGCAGGAAATCGTTGCACGTACTCATTTCCTCGGCAAAGCGAAACGCCGC
GCTCAGCTACTGGCCATCAATACTCATGTACAGCCAGGGGAAACGGTCAAAAGCGCAGAGGGCGACATCGGCCAGGTGGC
CAGCGTTGCAGAGGGTCTAGCACTCGCAGTACTTCCAATAGACACAGAATACGGTGAACTCAGAGTCGCCGGAACACTGG
CAACACCCCTTCCTTTCGTCGCCGGGCTTGCACGCTGA

Upstream 100 bases:

>100_bases
ATCTTTATCCGAACATATAACTAGGGTCTCTGTATACATCCTGTATACATTCAGCAAAAACGCTTACTGAGCGTCTTATC
TTAAAAGAACCTGCAAGGCA

Downstream 100 bases:

>100_bases
TATAGGCAGATCCGGCGACACTCGCCTGCCCATCAACTGGAACCGAACCACATTCACCCTTGAGACAGATGTAAGAATGG
GAACTGTCAAAAACACATCC

Product: putative aminomethyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MRSIPIILFKPAAILFLSPVTDNLQSNGQTLFPLPSYEMLRISGADTLSFAHAQFSSDAQGLAIGKWHWSAWLTPKGRVT
ALFALYRPAENELLLILPDGEAVMMATQLQRYIFRRKVQIAVERNLITTATYDTPVHATGTQAAQLDGITELDVSGITLP
RRLLLVPAAAMPPRVPAFEAQWRAADLRLGLPRLDASQRDQWTPQQIGLDGLNAYSIRKGCYPGQEIVARTHFLGKAKRR
AQLLAINTHVQPGETVKSAEGDIGQVASVAEGLALAVLPIDTEYGELRVAGTLATPLPFVAGLAR

Sequences:

>Translated_305_residues
MRSIPIILFKPAAILFLSPVTDNLQSNGQTLFPLPSYEMLRISGADTLSFAHAQFSSDAQGLAIGKWHWSAWLTPKGRVT
ALFALYRPAENELLLILPDGEAVMMATQLQRYIFRRKVQIAVERNLITTATYDTPVHATGTQAAQLDGITELDVSGITLP
RRLLLVPAAAMPPRVPAFEAQWRAADLRLGLPRLDASQRDQWTPQQIGLDGLNAYSIRKGCYPGQEIVARTHFLGKAKRR
AQLLAINTHVQPGETVKSAEGDIGQVASVAEGLALAVLPIDTEYGELRVAGTLATPLPFVAGLAR
>Mature_305_residues
MRSIPIILFKPAAILFLSPVTDNLQSNGQTLFPLPSYEMLRISGADTLSFAHAQFSSDAQGLAIGKWHWSAWLTPKGRVT
ALFALYRPAENELLLILPDGEAVMMATQLQRYIFRRKVQIAVERNLITTATYDTPVHATGTQAAQLDGITELDVSGITLP
RRLLLVPAAAMPPRVPAFEAQWRAADLRLGLPRLDASQRDQWTPQQIGLDGLNAYSIRKGCYPGQEIVARTHFLGKAKRR
AQLLAINTHVQPGETVKSAEGDIGQVASVAEGLALAVLPIDTEYGELRVAGTLATPLPFVAGLAR

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435 [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=234, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 33208; Mature: 33208

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIPIILFKPAAILFLSPVTDNLQSNGQTLFPLPSYEMLRISGADTLSFAHAQFSSDAQ
CCCCCEEEECCCEEEEECCCHHHHHCCCCEEEECCCCEEEEECCCCCEEEHHHHCCCCCC
GLAIGKWHWSAWLTPKGRVTALFALYRPAENELLLILPDGEAVMMATQLQRYIFRRKVQI
CEEEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCEEHHHHHHHHHHHHHHEEE
AVERNLITTATYDTPVHATGTQAAQLDGITELDVSGITLPRRLLLVPAAAMPPRVPAFEA
EEECCEEEEEECCCCCCCCCCCHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCC
QWRAADLRLGLPRLDASQRDQWTPQQIGLDGLNAYSIRKGCYPGQEIVARTHFLGKAKRR
CCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHC
AQLLAINTHVQPGETVKSAEGDIGQVASVAEGLALAVLPIDTEYGELRVAGTLATPLPFV
EEEEEEECCCCCCCCHHCCCCCHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCHHHH
AGLAR
HHCCC
>Mature Secondary Structure
MRSIPIILFKPAAILFLSPVTDNLQSNGQTLFPLPSYEMLRISGADTLSFAHAQFSSDAQ
CCCCCEEEECCCEEEEECCCHHHHHCCCCEEEECCCCEEEEECCCCCEEEHHHHCCCCCC
GLAIGKWHWSAWLTPKGRVTALFALYRPAENELLLILPDGEAVMMATQLQRYIFRRKVQI
CEEEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCEEHHHHHHHHHHHHHHEEE
AVERNLITTATYDTPVHATGTQAAQLDGITELDVSGITLPRRLLLVPAAAMPPRVPAFEA
EEECCEEEEEECCCCCCCCCCCHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCC
QWRAADLRLGLPRLDASQRDQWTPQQIGLDGLNAYSIRKGCYPGQEIVARTHFLGKAKRR
CCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHC
AQLLAINTHVQPGETVKSAEGDIGQVASVAEGLALAVLPIDTEYGELRVAGTLATPLPFV
EEEEEEECCCCCCCCHHCCCCCHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCHHHH
AGLAR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]