Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182680828
Identifier: 182680828
GI number: 182680828
Start: 343470
End: 344639
Strand: Reverse
Name: 182680828
Synonym: XfasM23_0263
Alternate gene names: NA
Gene position: 344639-343470 (Counterclockwise)
Preceding gene: 182680831
Following gene: 182680827
Centisome position: 13.59
GC content: 53.76
Gene sequence:
>1170_bases ATGCGCCCCATCAAGTTTCTTTTCACTCTATGCCTAACAAGCACCGCTTCCGCTGCCGTCGCTGGCGACTTTAACCACTG GCCATTGCAATATACCTTTGGCAACGCAACAGAGGCTTCGTTAACCGGAAACTTTGCTTACGACTACAACAACTTCTCTG GTGATGATCGTCTTAAAGACAGAAATTTTATGCGCCGCAAAGAATTGGGTATCTCAATTAAAAAGAAGGATGTCTATGAC GCCGCTGTTGCCTTTGACTTCCAATCCAAACTGTGGCTTGACGTTTTCTTCCGCTTTGAAACAAAAGCACTCTTTGACCA GGATTACGGTCGTATCCGCCTAGGCTACATGAAAACCCCAGTGGGTATGGAAGCACTCGCCAGCTCACGCGCTGGAAGCT TCATGGAAACTGCACTGCCGGTGCAATCCATCTATGAAGGGCGCCGTACCGGCGTGGAATGGGTGCTGGAACGTCCACAG TACCTGCTGCAAACCGGTGCCTACGGCGGAAAAGATCTACAAGGCGACAACCCGGGCACCACCCAAGCCATCCGTGCAAT ATGGACTCCGTTCAAGAGCACTGGCGACGTACTGCACTTGGGCGTGTCCTATTCACAGGAAAACCCACGCGGCTACCATA ACGGCTCAAACGTATCCTTCAGCCCACGCACCCGGGTACGCGCCCGTCCAGAAAGCGGACTGACCGACGTGCGCCTCATC GACTCGGGCACCCTGGTTGACGTTGACAAAATCCAACGCAACGGCTTGGAACAACTATGGATCCACGGCCCACTCCTGGT ACAGAGCGAAGCACTGCATATCAAAGTGACACGTAATAACGGCCTACCCACTTACAACGGCAACGGCCAGTACATCTACG GCAGTTGGATACTGACTGGCGAATCCCGGCCTTACACAGCCGGCACCGTTGGCAATGTCACTCCCATGCACGACTACGGC GCAGTCGAATTACTGGCCCGCTACAGCCGCCTCAACCTGGATAACGGCAGCATCCTCGGCGGGCGTCAACACGACTGGAC TGTCGGCGCCAACTGGTACCTCACCAACTACTTCAAATTCCAAGCAAACTACGTCAAAGTCAACGCTACTCGCCTTGGCA CACGTACCACACCGGATATTGTCGAGCTACGCGCCCAAGTTCATTTTTGA
Upstream 100 bases:
>100_bases GTCGCACCTGTAAAAGCCCGTCCCAGAAATGCACTTGCCTCCTATGGAATGCCTCGGCAACAACAACCCCATACATTAAT CTGAAGTTCAGAGAACCGCT
Downstream 100 bases:
>100_bases ACCATGAGCCACATCACGTGGTAACAGCACATGATGTAGCATTTGGCACATTTCCAGGTACCAACCCTAAATCATCATGA CAGCGGCACTGGACGCGTGC
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: Polyphosphate-Selective Porin O; Phosphate-Selective Porin O And P Superfamily; Porin O; Phosphate Selective Porin; Porin P; Porin Outer Membrane Protein; Phosphate-Selective Porin OprO/OprP Family; Porin O/P Polyphosphate-Selective; Polyphosphate-Selective Porin O Protein; Phosphate-Selective Porin O And P Family; Outer Membrane Porin OprO
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MRPIKFLFTLCLTSTASAAVAGDFNHWPLQYTFGNATEASLTGNFAYDYNNFSGDDRLKDRNFMRRKELGISIKKKDVYD AAVAFDFQSKLWLDVFFRFETKALFDQDYGRIRLGYMKTPVGMEALASSRAGSFMETALPVQSIYEGRRTGVEWVLERPQ YLLQTGAYGGKDLQGDNPGTTQAIRAIWTPFKSTGDVLHLGVSYSQENPRGYHNGSNVSFSPRTRVRARPESGLTDVRLI DSGTLVDVDKIQRNGLEQLWIHGPLLVQSEALHIKVTRNNGLPTYNGNGQYIYGSWILTGESRPYTAGTVGNVTPMHDYG AVELLARYSRLNLDNGSILGGRQHDWTVGANWYLTNYFKFQANYVKVNATRLGTRTTPDIVELRAQVHF
Sequences:
>Translated_389_residues MRPIKFLFTLCLTSTASAAVAGDFNHWPLQYTFGNATEASLTGNFAYDYNNFSGDDRLKDRNFMRRKELGISIKKKDVYD AAVAFDFQSKLWLDVFFRFETKALFDQDYGRIRLGYMKTPVGMEALASSRAGSFMETALPVQSIYEGRRTGVEWVLERPQ YLLQTGAYGGKDLQGDNPGTTQAIRAIWTPFKSTGDVLHLGVSYSQENPRGYHNGSNVSFSPRTRVRARPESGLTDVRLI DSGTLVDVDKIQRNGLEQLWIHGPLLVQSEALHIKVTRNNGLPTYNGNGQYIYGSWILTGESRPYTAGTVGNVTPMHDYG AVELLARYSRLNLDNGSILGGRQHDWTVGANWYLTNYFKFQANYVKVNATRLGTRTTPDIVELRAQVHF >Mature_389_residues MRPIKFLFTLCLTSTASAAVAGDFNHWPLQYTFGNATEASLTGNFAYDYNNFSGDDRLKDRNFMRRKELGISIKKKDVYD AAVAFDFQSKLWLDVFFRFETKALFDQDYGRIRLGYMKTPVGMEALASSRAGSFMETALPVQSIYEGRRTGVEWVLERPQ YLLQTGAYGGKDLQGDNPGTTQAIRAIWTPFKSTGDVLHLGVSYSQENPRGYHNGSNVSFSPRTRVRARPESGLTDVRLI DSGTLVDVDKIQRNGLEQLWIHGPLLVQSEALHIKVTRNNGLPTYNGNGQYIYGSWILTGESRPYTAGTVGNVTPMHDYG AVELLARYSRLNLDNGSILGGRQHDWTVGANWYLTNYFKFQANYVKVNATRLGTRTTPDIVELRAQVHF
Specific function: Unknown
COG id: COG3746
COG function: function code P; Phosphate-selective porin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43766; Mature: 43766
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPIKFLFTLCLTSTASAAVAGDFNHWPLQYTFGNATEASLTGNFAYDYNNFSGDDRLKD CCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCEEECEEEEECCCCCCCCCHHH RNFMRRKELGISIKKKDVYDAAVAFDFQSKLWLDVFFRFETKALFDQDYGRIRLGYMKTP HHHHHHHHHCCEEEECCCEEEEEEEECCCCEEEEEEEEEHHHHHHCCCCCEEEEEEEECC VGMEALASSRAGSFMETALPVQSIYEGRRTGVEWVLERPQYLLQTGAYGGKDLQGDNPGT CCHHHHHHHCCCCHHHHHCCHHHHHCCHHCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCH TQAIRAIWTPFKSTGDVLHLGVSYSQENPRGYHNGSNVSFSPRTRVRARPESGLTDVRLI HHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCCEEEEE DSGTLVDVDKIQRNGLEQLWIHGPLLVQSEALHIKVTRNNGLPTYNGNGQYIYGSWILTG CCCCEEEHHHHHHCCCCEEEECCCEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEEC ESRPYTAGTVGNVTPMHDYGAVELLARYSRLNLDNGSILGGRQHDWTVGANWYLTNYFKF CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEECCCEEEEEEEEE QANYVKVNATRLGTRTTPDIVELRAQVHF EEEEEEEEEEECCCCCCHHHHHHHHCCCC >Mature Secondary Structure MRPIKFLFTLCLTSTASAAVAGDFNHWPLQYTFGNATEASLTGNFAYDYNNFSGDDRLKD CCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCEEECEEEEECCCCCCCCCHHH RNFMRRKELGISIKKKDVYDAAVAFDFQSKLWLDVFFRFETKALFDQDYGRIRLGYMKTP HHHHHHHHHCCEEEECCCEEEEEEEECCCCEEEEEEEEEHHHHHHCCCCCEEEEEEEECC VGMEALASSRAGSFMETALPVQSIYEGRRTGVEWVLERPQYLLQTGAYGGKDLQGDNPGT CCHHHHHHHCCCCHHHHHCCHHHHHCCHHCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCH TQAIRAIWTPFKSTGDVLHLGVSYSQENPRGYHNGSNVSFSPRTRVRARPESGLTDVRLI HHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCCEEEEE DSGTLVDVDKIQRNGLEQLWIHGPLLVQSEALHIKVTRNNGLPTYNGNGQYIYGSWILTG CCCCEEEHHHHHHCCCCEEEECCCEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEEC ESRPYTAGTVGNVTPMHDYGAVELLARYSRLNLDNGSILGGRQHDWTVGANWYLTNYFKF CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEECCCEEEEEEEEE QANYVKVNATRLGTRTTPDIVELRAQVHF EEEEEEEEEEECCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA