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The map label for this gene is agmR [H]

Identifier: 182680826

GI number: 182680826

Start: 340416

End: 341048

Strand: Direct

Name: agmR [H]

Synonym: XfasM23_0261

Alternate gene names: 182680826

Gene position: 340416-341048 (Clockwise)

Preceding gene: 182680825

Following gene: 182680829

Centisome position: 13.42

GC content: 51.66

Gene sequence:

>633_bases
ATGAGTGAGATGCTGATCCTGGTGGCCGATGACCATCCACTATTTCGCAATGCGGTGATTCAAGTGCTGCGCGAAAATTT
TCAGGATGCCCAGGTGCTGGATGCTTCCAGTGCCGCGACGCTCAGGTCGGCATTGCAGGCATATCCACAAACGGAATTGG
TGTTGTTGGATTTGGCAATGCCAGGCGCGCGAGGTTTTTCGGCGTTATTGCATGTGCGTGGTGAGCACCCGGATATCCCT
GTGGTGGTGATTTCTTCTAATGATCACCCACGGGTGATCCGTCGTGCGCAGCAATTCGGTGCTGCTGGTTTTATTCCCAA
GTCCTCACCACCGGAGACGATAACGGAAGTGGTTGCTGCAGTGTTGGATGGCTGCACCTGGTTCCCACCGATGTTGGTGG
AGTGTTCTGAAGCCGATACCCAGTTAGCCGTTAAATTGGCTCGACTGACTCCACAACAATTCCGTGTGTTGTTGTGCTTG
GCTGATGGCCTGTTAAATAAACAAATTGCGTATGAATTGGGTTTGGCGGAAAACACCGTCAAGGTGCATGTAACAGCCAT
TTTGAAAAAATTGGAGTGCTATAGCCGTACCCAGGCAGCGGTATTGGTGAAGTCGCTTGAGCCTGAAGCCTAG

Upstream 100 bases:

>100_bases
GTCGTGCGAGGGCGTTAATGAAGTGTCTCTTCTCTTAACTGCTGGATGCTGCTGTTGGATTGGGCTGCTGTGCATGTGGT
CATCGTGCCAGACTGCACAC

Downstream 100 bases:

>100_bases
ACACGGCTTTATAAACGCGGCTGGTGAAGGATGTTCTGTGTTGTGTTCAGTCTTGGCGTAGCAGTGTTTGTGTCATCAGT
GCACGTAATGCCGGTGGCCG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQTELVLLDLAMPGARGFSALLHVRGEHPDIP
VVVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAAVLDGCTWFPPMLVECSEADTQLAVKLARLTPQQFRVLLCL
ADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVLVKSLEPEA

Sequences:

>Translated_210_residues
MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQTELVLLDLAMPGARGFSALLHVRGEHPDIP
VVVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAAVLDGCTWFPPMLVECSEADTQLAVKLARLTPQQFRVLLCL
ADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVLVKSLEPEA
>Mature_209_residues
SEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQTELVLLDLAMPGARGFSALLHVRGEHPDIPV
VVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAAVLDGCTWFPPMLVECSEADTQLAVKLARLTPQQFRVLLCLA
DGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVLVKSLEPEA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=203, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786747, Length=196, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789937, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787473, Length=205, Percent_Identity=33.6585365853659, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790102, Length=190, Percent_Identity=29.4736842105263, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788546, Length=197, Percent_Identity=22.3350253807107, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788222, Length=200, Percent_Identity=21, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22905; Mature: 22774

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQTELVLLDLAM
CCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEEECC
PGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAA
CCCHHHHHHHEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VLDGCTWFPPMLVECSEADTQLAVKLARLTPQQFRVLLCLADGLLNKQIAYELGLAENTV
HHCCCCCCCHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KVHVTAILKKLECYSRTQAAVLVKSLEPEA
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQTELVLLDLAM
CCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEEECC
PGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKSSPPETITEVVAA
CCCHHHHHHHEECCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VLDGCTWFPPMLVECSEADTQLAVKLARLTPQQFRVLLCLADGLLNKQIAYELGLAENTV
HHCCCCCCCHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KVHVTAILKKLECYSRTQAAVLVKSLEPEA
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]