Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is oprO [H]
Identifier: 182680821
GI number: 182680821
Start: 335372
End: 336568
Strand: Reverse
Name: oprO [H]
Synonym: XfasM23_0256
Alternate gene names: 182680821
Gene position: 336568-335372 (Counterclockwise)
Preceding gene: 182680827
Following gene: 182680820
Centisome position: 13.27
GC content: 54.8
Gene sequence:
>1197_bases GTGGCGATACGACGCCTGCGCACTATTTTTGTTTCCCTACTGCTAGGCTTAGCCGCCTCGGCCACTCAGGCGGCCGATCG CAGTGACCGCAATGTAACCGCCAAACTGGAAGGACGATTTGAATGGGATTTTGCACTATTCGACAACGACACTCGCGGGA CTCCAAATCGCAGCAATAACGAGATCCGCAGATTCTGGCTTGATGTGACGGGTAAGGTTTTCGCCTTCGACTACACGATA GAAGGCAATTTCACAAATTTGCAGGATAAGTTCAAAGGAAAAAGTATCGAGATGGGAGATGTCTATCTCAGACACGACTT TGGCAACACCGGCACGCTGACCCTCGGACAGTTCAAACAACATTTCAGCCTAGACGACCGCACCAGCCCTGACTACGGCC AATTCTTGGAACGCAGTGGAGGCGCCAATACACTGGCACCGGAGTACCACAAGGGTGTGTCATGGAAAGCCACACACCAA AACACCACTTGGTGGGTCAGCGCCTACAGCCTGGACAGCATTAGTCTCTCCAACGTCAACGGGCGTGGACTCGGTGGCCG CGGAACCTGGTCGCCAGACACACCAGAGGGCGACGTGCTGCATCTTGGCCTGTCGCTGGCACACCAGCGTTACGATCATC CCGGCAGCGACGGCATGACCGCCTTAAGCATCCGCCCACTCCCGGCTGGGCACCTGTCCGACAACAGTGGCATTACGCTG GCACATTTCGCCAACGGACGCGATACCAAAGTAAACAGATGGGCACTGGAATACGCGCAAGTGCGCGGACCGCTGTCATG GCAAAGTGAGTATATCGGCGGTGCATTCAACGACGGCATGCAACGCGCCACTGTGCAATCGGCCTACGGCTTTGTCAGTT GGTTCGTCACGGGTGAATCTCGTACCTACGACCGCAAAACTGGACGATTCACACGCATCAAAACACTGCACAATCCACGT GGCGCATTAGAATTGGCGCTACGATACGATCGCATGTGGGGCAACCAACACCACAACAACCAACCCAATTTCCTCAATGC GTCCACCGCCTCCTGTACACTGGGCGTAAACTGGTACATTAAACCCAACCTAAGACTGATGCTCAACCTGATCGACAGCC GTAATCGCGACCGTTTGGCCGGCACCGTTTTAGACCATACCCGGGCATTGACCGGGCGTTTACATTACGACTTTTAG
Upstream 100 bases:
>100_bases GTCATTGACAGGTCAATGACAGCTTTGCCCACCTAAGCTGAAGGTATTCACCTGAGGTTCTGCTCAAGTTTCACACACCA CACAGCACATGGGAGGGTAT
Downstream 100 bases:
>100_bases TATGCCCCTCAGCGCCGACACACACGTCGAAATATTGACTTTCAGCCAAGTGCTACGCCGCAATAGGTGCGGCGTATGCG CGATAACGGCATGCTATCGC
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MAIRRLRTIFVSLLLGLAASATQAADRSDRNVTAKLEGRFEWDFALFDNDTRGTPNRSNNEIRRFWLDVTGKVFAFDYTI EGNFTNLQDKFKGKSIEMGDVYLRHDFGNTGTLTLGQFKQHFSLDDRTSPDYGQFLERSGGANTLAPEYHKGVSWKATHQ NTTWWVSAYSLDSISLSNVNGRGLGGRGTWSPDTPEGDVLHLGLSLAHQRYDHPGSDGMTALSIRPLPAGHLSDNSGITL AHFANGRDTKVNRWALEYAQVRGPLSWQSEYIGGAFNDGMQRATVQSAYGFVSWFVTGESRTYDRKTGRFTRIKTLHNPR GALELALRYDRMWGNQHHNNQPNFLNASTASCTLGVNWYIKPNLRLMLNLIDSRNRDRLAGTVLDHTRALTGRLHYDF
Sequences:
>Translated_398_residues MAIRRLRTIFVSLLLGLAASATQAADRSDRNVTAKLEGRFEWDFALFDNDTRGTPNRSNNEIRRFWLDVTGKVFAFDYTI EGNFTNLQDKFKGKSIEMGDVYLRHDFGNTGTLTLGQFKQHFSLDDRTSPDYGQFLERSGGANTLAPEYHKGVSWKATHQ NTTWWVSAYSLDSISLSNVNGRGLGGRGTWSPDTPEGDVLHLGLSLAHQRYDHPGSDGMTALSIRPLPAGHLSDNSGITL AHFANGRDTKVNRWALEYAQVRGPLSWQSEYIGGAFNDGMQRATVQSAYGFVSWFVTGESRTYDRKTGRFTRIKTLHNPR GALELALRYDRMWGNQHHNNQPNFLNASTASCTLGVNWYIKPNLRLMLNLIDSRNRDRLAGTVLDHTRALTGRLHYDF >Mature_397_residues AIRRLRTIFVSLLLGLAASATQAADRSDRNVTAKLEGRFEWDFALFDNDTRGTPNRSNNEIRRFWLDVTGKVFAFDYTIE GNFTNLQDKFKGKSIEMGDVYLRHDFGNTGTLTLGQFKQHFSLDDRTSPDYGQFLERSGGANTLAPEYHKGVSWKATHQN TTWWVSAYSLDSISLSNVNGRGLGGRGTWSPDTPEGDVLHLGLSLAHQRYDHPGSDGMTALSIRPLPAGHLSDNSGITLA HFANGRDTKVNRWALEYAQVRGPLSWQSEYIGGAFNDGMQRATVQSAYGFVSWFVTGESRTYDRKTGRFTRIKTLHNPRG ALELALRYDRMWGNQHHNNQPNFLNASTASCTLGVNWYIKPNLRLMLNLIDSRNRDRLAGTVLDHTRALTGRLHYDF
Specific function: Anion specific, the binding site has higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates (tripolyphosphate and pyrophosphate) while porin P has a higher affinity for orthophosphate [H]
COG id: COG3746
COG function: function code P; Phosphate-selective porin
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oprO/oprP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010870 [H]
Pfam domain/function: PF07396 Porin_O_P [H]
EC number: NA
Molecular weight: Translated: 44845; Mature: 44713
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRRLRTIFVSLLLGLAASATQAADRSDRNVTAKLEGRFEWDFALFDNDTRGTPNRSNN CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEEEECCCCCCCCCCCCC EIRRFWLDVTGKVFAFDYTIEGNFTNLQDKFKGKSIEMGDVYLRHDFGNTGTLTLGQFKQ CEEEEEEECCCEEEEEEEEEECCCCCCHHHHCCCCEEECCEEEEECCCCCCCEEHHHHHH HFSLDDRTSPDYGQFLERSGGANTLAPEYHKGVSWKATHQNTTWWVSAYSLDSISLSNVN HCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCEEEEEEEEECCEEEECCC GRGLGGRGTWSPDTPEGDVLHLGLSLAHQRYDHPGSDGMTALSIRPLPAGHLSDNSGITL CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEE AHFANGRDTKVNRWALEYAQVRGPLSWQSEYIGGAFNDGMQRATVQSAYGFVSWFVTGES EEECCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHCCHHHHHHHHHCCEEEEEEECCC RTYDRKTGRFTRIKTLHNPRGALELALRYDRMWGNQHHNNQPNFLNASTASCTLGVNWYI CCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCCCCCEEECCCCEEEEEEEEEE KPNLRLMLNLIDSRNRDRLAGTVLDHTRALTGRLHYDF CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEECCC >Mature Secondary Structure AIRRLRTIFVSLLLGLAASATQAADRSDRNVTAKLEGRFEWDFALFDNDTRGTPNRSNN CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEEEECCCCCCCCCCCCC EIRRFWLDVTGKVFAFDYTIEGNFTNLQDKFKGKSIEMGDVYLRHDFGNTGTLTLGQFKQ CEEEEEEECCCEEEEEEEEEECCCCCCHHHHCCCCEEECCEEEEECCCCCCCEEHHHHHH HFSLDDRTSPDYGQFLERSGGANTLAPEYHKGVSWKATHQNTTWWVSAYSLDSISLSNVN HCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCEEEEEEEEECCEEEECCC GRGLGGRGTWSPDTPEGDVLHLGLSLAHQRYDHPGSDGMTALSIRPLPAGHLSDNSGITL CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEE AHFANGRDTKVNRWALEYAQVRGPLSWQSEYIGGAFNDGMQRATVQSAYGFVSWFVTGES EEECCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHCCHHHHHHHHHCCEEEEEEECCC RTYDRKTGRFTRIKTLHNPRGALELALRYDRMWGNQHHNNQPNFLNASTASCTLGVNWYI CCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCCCCCEEECCCCEEEEEEEEEE KPNLRLMLNLIDSRNRDRLAGTVLDHTRALTGRLHYDF CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406271; 10984043 [H]