| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is acnB [H]
Identifier: 182680798
GI number: 182680798
Start: 303909
End: 306569
Strand: Direct
Name: acnB [H]
Synonym: XfasM23_0227
Alternate gene names: 182680798
Gene position: 303909-306569 (Clockwise)
Preceding gene: 182680797
Following gene: 182680802
Centisome position: 11.99
GC content: 54.27
Gene sequence:
>2661_bases ATGAGTGCCTCCATCCATACGTTGTCCATCCTAAATTATTTATGTGGAGAGTTACCTATGTTGGAAGCCTATCGCCACCA TGTTGCTGAGCGCGCTGCGCTTGGCATTCCACCATTGCCGCTGAGTGCGCAGCAGACGGCAGATGTCATTGAATTGTTTA AAGCCCCACCAGCGGGTGAAGAAGATTTTCTCCTGGATCTCATCACCCACCGTGTGCCAGGCGGCGTAGATGATGCGGCT AAAGTCAAAGCCTCCTATTTGGCCGCGGTTGCCTTTGGCACGGAAGTCACGCCGTTGCTCACGTCACAGCGCGCCACCGA ATTATTAGCGACGATGCTCGGGGGCTATAACATCCAACCGTTGATTGATTTGCTTGATCATGCCGCATTAGGTCAGGTTG CGGCCGAAGGGTTGAAGCACACCTTACTGGTGTTTGATGCGTTCCATGATGTGCAGGAGAAAGCAGAGCAGGGCAATGGC AACGCACGCGCAGTCCTTGAAAGCTGGGCGGCGGCTGAGTGGTTCACCAGCAAGCCGGAAGTGCCGCAGTGCCTGACCGT CACCGTGTTCAAAGTCCCCGGTGAAACCAATACCGATGATTTGTCGCCGGCACCGGATGCGACAACCCGGCCGGATATTC CGATGCATGCGTTAGCGATGCTGAAGAACAAGCGTGAGGGAGCACCGTTTGTACCCGAAGAAGATGGCAAACGGGGTCCA ATTCAAGAGATGTTGTCGTTGAAGGAGAAAGGGCATCTCGTTGCCTATGTCGGTGATGTTGTCGGTACAGGCTCCAGCCG GAAGTCCGCAACTAACTCGGTGCTGTGGTGGACGGGCAAGGACATTCCATACATTCCGAACAAACGTTTCGGAGGTGTGT GTTTAGGCTCGAAGATCGCGCCGATTTTCTACAACACGATGGAAGATGCTGGTGCGCTGCCGATCGAGCTTGATGTATCG AAGATGGAACATGGCGACGTGATTGAGTTGTATCCGTATGAAGGGAAAGCACGGAAGAACGGCGTAGTGATTGCTGAATT TTCGTTGAAATCGGACGTGTTGTTGGATGAGGTGCGCGCTGGTGGTCGTATCCCGCTCATCATTGGCCGTGGCCTGACCT CCAAGGCGCGTGAGGCCTTAAAGCTGGAACCCACTTCCCTATTCCGTTTGCCCGTCAATCCACCGGAGACTGGCCGCGGA TTTTCGTTGGCGCAGAAGATCGTGGGCCGTGCTTGTGGCCTCCCCGAAGTAAATGGCAAGCAGCAGGGCATGCGCCCGGG GACATACTGCGAACCGAAAATGACATCAGTCGGTTCACAGGATACGACCGGTCCCATGACGCGTGACGAATTGAAAGATT TGGCCTGCCTGGGATTCTCCGCTGACTTGGTGATGCAGTCGTTCTGCCACACCGCGGCCTACCCGAAACCGGTGGATGTA AAAACTCACCACACCTTGCCGGAATTCATTTCCACCCGTGGCGGCGTCTCCCTGCGTCCTGGTGATGGTGTGATTCATAG TTGGCTCAATCGCATGCTGTTGCCTGATACCGTCGGTACTGGCGGTGATTCGCATACCCGTTTCCCGATTGGTATTTCGT TTCCTGCGGGGTCTGGCTTGGTTGCTTTCGCTGCGGCGACCGGAGTGATGCCGTTGGATATGCCCGAATCCGTCTTGGTG CGCTTCAAAGGTCACATGCAACCGGGGGTGACGCTACGTGATCTGGTGAATGCGATTCCGCTGTACGCCATCAAACAAGG CTTGTTGACTGTTGCCAAACAGGGCAAGAAAAACATTTTCTCTGGTCGGATTCTCGAAATTGAAGGGCTGCCCAACTTGA AGGTAGAACAGGCATTCGAGCTGTCTGATGCTTCGGCGGAACGTTCAGCGGCGGGCTGCACCGTCCGTTTGAATAAAGAG CCGATCATTGAGTATCTCAATAGCAATATCACCCTGTTGAAGTGGATGATTGCCGAAGGCTATGCCGATGCCCGTTCCTT GGCGCGCCGGATTAAGAAGATGGAAGCATGGCTGGCTGATCCGCAACTGATCGAACCGGATACCGACGTTGAGTACGCTG CGGTCATTGAGATCGACCTGGCTGATATTCATGAACCTATTGTGGCCTGCCCGAATGACCCAGATGACGTGAAAACCTTG TCTGAAATTGCGGGCGCGAAAATTGACGAGGTCTTTATCGGTTCATGCATGACCAATATTGGCCACTTCCGCGCTGCGGC CAAGCTGTTGGAAGGCAAACGTGATATCCCAACTCGGCTATGGGTGGCTCCCCCGACCAAAATGGACGCATCGGAGCTGA CCAAGGAAGGCCACTATGGCACCTTTGGCAATGCTGGGGCGCGTATGGAGATGCCAGGCTGCTCCCTGTGCATGGGCAAT CAAGCGCAGGCGCGTGAGGGGGCGACGGTATTTTCTACCTCCACCCGTAACTTCCCTAATCGCTTGGGTCGTAATACCAA CGTGTATCTGGGTTCGGCAGAATTAGCCGCTATCTGCTCCCGCTTGGGAAAAATTCCGACCAAGGATGAATACATGGCAG ACATTGGTGTGATCGATACTCAACGTACGGAGATATACCGTTACATGAACTTTGATCAGATCCAGGAGTATCTGGATGTG GATCACACTGCGGTCGCGTGA
Upstream 100 bases:
>100_bases TTGGCGCTCATGCGTTGTTGCAGTGCGACGGCCTGATGACCTGGAACGATGCGTTTTATCGTGACTATTTTAAAGGTATG AAACTCATCGTGCCAGGCGC
Downstream 100 bases:
>100_bases TCGTCAATAGGACGTGGTGTCATCGCCCCCGGCCAGGAGTTTGCCAGCTCCGGCTCGGGGGCTTGATGAGGTAAGCAGAC TTGTTTTGGCCGCAGCTCAT
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MSASIHTLSILNYLCGELPMLEAYRHHVAERAALGIPPLPLSAQQTADVIELFKAPPAGEEDFLLDLITHRVPGGVDDAA KVKASYLAAVAFGTEVTPLLTSQRATELLATMLGGYNIQPLIDLLDHAALGQVAAEGLKHTLLVFDAFHDVQEKAEQGNG NARAVLESWAAAEWFTSKPEVPQCLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKREGAPFVPEEDGKRGP IQEMLSLKEKGHLVAYVGDVVGTGSSRKSATNSVLWWTGKDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVS KMEHGDVIELYPYEGKARKNGVVIAEFSLKSDVLLDEVRAGGRIPLIIGRGLTSKAREALKLEPTSLFRLPVNPPETGRG FSLAQKIVGRACGLPEVNGKQQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDV KTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLV RFKGHMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVRLNKE PIIEYLNSNITLLKWMIAEGYADARSLARRIKKMEAWLADPQLIEPDTDVEYAAVIEIDLADIHEPIVACPNDPDDVKTL SEIAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGNAGARMEMPGCSLCMGN QAQAREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGKIPTKDEYMADIGVIDTQRTEIYRYMNFDQIQEYLDV DHTAVA
Sequences:
>Translated_886_residues MSASIHTLSILNYLCGELPMLEAYRHHVAERAALGIPPLPLSAQQTADVIELFKAPPAGEEDFLLDLITHRVPGGVDDAA KVKASYLAAVAFGTEVTPLLTSQRATELLATMLGGYNIQPLIDLLDHAALGQVAAEGLKHTLLVFDAFHDVQEKAEQGNG NARAVLESWAAAEWFTSKPEVPQCLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKREGAPFVPEEDGKRGP IQEMLSLKEKGHLVAYVGDVVGTGSSRKSATNSVLWWTGKDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVS KMEHGDVIELYPYEGKARKNGVVIAEFSLKSDVLLDEVRAGGRIPLIIGRGLTSKAREALKLEPTSLFRLPVNPPETGRG FSLAQKIVGRACGLPEVNGKQQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDV KTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLV RFKGHMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVRLNKE PIIEYLNSNITLLKWMIAEGYADARSLARRIKKMEAWLADPQLIEPDTDVEYAAVIEIDLADIHEPIVACPNDPDDVKTL SEIAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGNAGARMEMPGCSLCMGN QAQAREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGKIPTKDEYMADIGVIDTQRTEIYRYMNFDQIQEYLDV DHTAVA >Mature_885_residues SASIHTLSILNYLCGELPMLEAYRHHVAERAALGIPPLPLSAQQTADVIELFKAPPAGEEDFLLDLITHRVPGGVDDAAK VKASYLAAVAFGTEVTPLLTSQRATELLATMLGGYNIQPLIDLLDHAALGQVAAEGLKHTLLVFDAFHDVQEKAEQGNGN ARAVLESWAAAEWFTSKPEVPQCLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKREGAPFVPEEDGKRGPI QEMLSLKEKGHLVAYVGDVVGTGSSRKSATNSVLWWTGKDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSK MEHGDVIELYPYEGKARKNGVVIAEFSLKSDVLLDEVRAGGRIPLIIGRGLTSKAREALKLEPTSLFRLPVNPPETGRGF SLAQKIVGRACGLPEVNGKQQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVK THHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVR FKGHMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVRLNKEP IIEYLNSNITLLKWMIAEGYADARSLARRIKKMEAWLADPQLIEPDTDVEYAAVIEIDLADIHEPIVACPNDPDDVKTLS EIAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGNAGARMEMPGCSLCMGNQ AQAREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGKIPTKDEYMADIGVIDTQRTEIYRYMNFDQIQEYLDVD HTAVA
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=863, Percent_Identity=72.1900347624565, Blast_Score=1253, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=375, Percent_Identity=23.2, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR015932 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 95988; Mature: 95857
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: PS00450 ACONITASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASIHTLSILNYLCGELPMLEAYRHHVAERAALGIPPLPLSAQQTADVIELFKAPPAGE CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC EDFLLDLITHRVPGGVDDAAKVKASYLAAVAFGTEVTPLLTSQRATELLATMLGGYNIQP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH LIDLLDHAALGQVAAEGLKHTLLVFDAFHDVQEKAEQGNGNARAVLESWAAAEWFTSKPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC VPQCLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKREGAPFVPEEDGKRGP CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC IQEMLSLKEKGHLVAYVGDVVGTGSSRKSATNSVLWWTGKDIPYIPNKRFGGVCLGSKIA HHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCC PIFYNTMEDAGALPIELDVSKMEHGDVIELYPYEGKARKNGVVIAEFSLKSDVLLDEVRA HHHHHHHHHCCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHC GGRIPLIIGRGLTSKAREALKLEPTSLFRLPVNPPETGRGFSLAQKIVGRACGLPEVNGK CCCEEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC QQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDV CCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC KTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL CCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC VAFAAATGVMPLDMPESVLVRFKGHMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIF EEEHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVRLNKEPIIEYLNSNITLLKWMIAEG CCEEEEECCCCCCCHHHHHCCCCCCCHHCCCCCEEEECCHHHHHHHCCCHHEEHHHHHHC YADARSLARRIKKMEAWLADPQLIEPDTDVEYAAVIEIDLADIHEPIVACPNDPDDVKTL CHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEEEHHHHCCCEEECCCCHHHHHHH SEIAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCC TFGNAGARMEMPGCSLCMGNQAQAREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICS CCCCCCCEEECCCCCEECCCCHHHCCCCEEEECCCCCCHHHHCCCCEEEECCHHHHHHHH RLGKIPTKDEYMADIGVIDTQRTEIYRYMNFDQIQEYLDVDHTAVA HHCCCCCCHHHHHHCCCEECCHHHHHHHCCHHHHHHHHCCCHHHCC >Mature Secondary Structure SASIHTLSILNYLCGELPMLEAYRHHVAERAALGIPPLPLSAQQTADVIELFKAPPAGE CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC EDFLLDLITHRVPGGVDDAAKVKASYLAAVAFGTEVTPLLTSQRATELLATMLGGYNIQP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH LIDLLDHAALGQVAAEGLKHTLLVFDAFHDVQEKAEQGNGNARAVLESWAAAEWFTSKPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC VPQCLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKREGAPFVPEEDGKRGP CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC IQEMLSLKEKGHLVAYVGDVVGTGSSRKSATNSVLWWTGKDIPYIPNKRFGGVCLGSKIA HHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCC PIFYNTMEDAGALPIELDVSKMEHGDVIELYPYEGKARKNGVVIAEFSLKSDVLLDEVRA HHHHHHHHHCCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHC GGRIPLIIGRGLTSKAREALKLEPTSLFRLPVNPPETGRGFSLAQKIVGRACGLPEVNGK CCCEEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC QQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDV CCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC KTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL CCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC VAFAAATGVMPLDMPESVLVRFKGHMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIF EEEHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVRLNKEPIIEYLNSNITLLKWMIAEG CCEEEEECCCCCCCHHHHHCCCCCCCHHCCCCCEEEECCHHHHHHHCCCHHEEHHHHHHC YADARSLARRIKKMEAWLADPQLIEPDTDVEYAAVIEIDLADIHEPIVACPNDPDDVKTL CHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEEEHHHHCCCEEECCCCHHHHHHH SEIAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCC TFGNAGARMEMPGCSLCMGNQAQAREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICS CCCCCCCEEECCCCCEECCCCHHHCCCCEEEECCCCCCHHHHCCCCEEEECCHHHHHHHH RLGKIPTKDEYMADIGVIDTQRTEIYRYMNFDQIQEYLDVDHTAVA HHCCCCCCHHHHHHCCCEECCHHHHHHHCCHHHHHHHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]