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The map label for this gene is rbfA

Identifier: 182680751

GI number: 182680751

Start: 247061

End: 247438

Strand: Direct

Name: rbfA

Synonym: XfasM23_0180

Alternate gene names: 182680751

Gene position: 247061-247438 (Clockwise)

Preceding gene: 182680750

Following gene: 182680752

Centisome position: 9.74

GC content: 49.47

Gene sequence:

>378_bases
GTGCCTAAGAAATCATTTCAGCGTACTGAACGTATTTCTGTCCAGATCCGCCGCGATTTAGGTGCTTTTGTCCAGGCCGC
TGTGCGTGATCATGGGCTGCCTTCTATGAGTGTCTCTGATGTTGAGGTGACTCGCGACATGGCGCACGCTAAGGTGTTCG
TGACTGCTCTTCAAGCAGAGCGATCATTCGAGGCAGTGGCAGGGTTGAAAGCATTGGCACGCGAATTGCGTATGCAATTA
GCGCAAACCATGAGACTGCGTTTCGTGCCTGAATTGCACTTCCATTACGATGATTCTTTGGATCGTGGTGAACGCATTGA
TACATTATTGCGCGACCTGATACCACCTGCTGATGCGGAAAAAGATGAATCTGGTTAA

Upstream 100 bases:

>100_bases
CTGTGCGCATCTGTTATTTTTAACTGTTGTCCCTTTACTTATAGGTCTAATTTCCGTCAGCTTGCCATTTTTCGTTTCTT
TCCAAAATAAAATTTTCCCC

Downstream 100 bases:

>100_bases
ACCTTGTATTGGTGAAATAACCAATTCAAGGTGTTGATCCTTTGTCCATAGTATGCTGTATTTGTTCGTTCTTCCCGTGT
TTGATGCTTCTTGCTTATGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MPKKSFQRTERISVQIRRDLGAFVQAAVRDHGLPSMSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQL
AQTMRLRFVPELHFHYDDSLDRGERIDTLLRDLIPPADAEKDESG

Sequences:

>Translated_125_residues
MPKKSFQRTERISVQIRRDLGAFVQAAVRDHGLPSMSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQL
AQTMRLRFVPELHFHYDDSLDRGERIDTLLRDLIPPADAEKDESG
>Mature_124_residues
PKKSFQRTERISVQIRRDLGAFVQAAVRDHGLPSMSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLA
QTMRLRFVPELHFHYDDSLDRGERIDTLLRDLIPPADAEKDESG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=115, Percent_Identity=38.2608695652174, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_XYLF2 (B2I727)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001828911.1
- ProteinModelPortal:   B2I727
- SMR:   B2I727
- GeneID:   6203349
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0180
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14176; Mature: 14045

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKSFQRTERISVQIRRDLGAFVQAAVRDHGLPSMSVSDVEVTRDMAHAKVFVTALQAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSFEAVAGLKALARELRMQLAQTMRLRFVPELHFHYDDSLDRGERIDTLLRDLIPPADAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
KDESG
CCCCC
>Mature Secondary Structure 
PKKSFQRTERISVQIRRDLGAFVQAAVRDHGLPSMSVSDVEVTRDMAHAKVFVTALQAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSFEAVAGLKALARELRMQLAQTMRLRFVPELHFHYDDSLDRGERIDTLLRDLIPPADAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
KDESG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA