Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is panC
Identifier: 182680745
GI number: 182680745
Start: 237483
End: 238328
Strand: Direct
Name: panC
Synonym: XfasM23_0174
Alternate gene names: 182680745
Gene position: 237483-238328 (Clockwise)
Preceding gene: 182680744
Following gene: 182680746
Centisome position: 9.37
GC content: 52.13
Gene sequence:
>846_bases GTGATTGATACCGTTACTGATCTGTCCAGGCTACGGGGGATTGTTGCTGACTGGAGGCGTCAGGGCTTGCGGGTCGCTCT GGTGCCTACCATGGGTAATTTGCATGCTGGCCATTTTTCATTGGTTATGTTGGCTCGTCATTATGCTGATCGGGTAGTGT CAAGTGTGTTTGTCAATCCGACGCAGTTTGGTCCCCACGAAGATTTTCAGCGTTATCCGCGAACACCCGAGGCAGACATG CGCGGTTTGGAACATGTGGGTTGCGATGTCTTGTGGTTGCCTAGTGTGGAGACGATGTACCCGTTGGGCACTGAGCGGAC TGTACGTCTGTTTATTCCGTGTGTGAGTGATGTGCTGGAGGGGACGTTCCGTCCTGGACACTTTGAGGGTGTTTGTACAG TGGTGGCACGGCTGTTCAATCAGGTGCTGCCGGATGTTGCTGTGTTCGGAAAGAAGGACTATCAGCAATTGGTGGTGATC CGGCAGATGGTGGTTGATTTAGCGTTTCCCATTGAGATTCTTGGTGGCTGTATCGTGCGTGAGTCCGATGGATTGGCGAT GAGTTCCCGTAATCAGTATCTATCAATGCAGCAACGACCGCAGGCTGCGGAGATTCATCGTACGTTGATAGCAATGCGCG ATGCTGTGATGTCAGGTGGTGTACACGCAGATGTCGAAGCTGAAGCGGTTCGGCGTTTGGAAGCGGCTGGGTTCCAGGTT GATTATGCGGTTATCCGATTGCCTGATCTATGCGAGCCGATTGACGGCATTGTTATCAGTCAGGGTATTGCACTTGTTGC TGCACGTTTAGGCAACACCCGCCTGATCGATAATCTTGAGTTCTGA
Upstream 100 bases:
>100_bases ATTTTCTCGCTCATGGGGGATCGGTTGCTGGCGCGGTTCGCGCTTATGCGAATGCGGTTCGAGATGGTTCGTTTCCAGAT GTCGAGCATACTTACACATC
Downstream 100 bases:
>100_bases TTATTCGTTCCGAATTAATTGTTACCACCGGTAGATGTCTGTCATTGGCTACAATCACTTTCCCTACTTTGCTGTGTTTC CCATGCAACTGTCCTTGCTT
Product: pantoate--beta-alanine ligase
Products: NA
Alternate protein names: PS; Pantoate--beta-alanine ligase; Pantoate-activating enzyme
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MIDTVTDLSRLRGIVADWRRQGLRVALVPTMGNLHAGHFSLVMLARHYADRVVSSVFVNPTQFGPHEDFQRYPRTPEADM RGLEHVGCDVLWLPSVETMYPLGTERTVRLFIPCVSDVLEGTFRPGHFEGVCTVVARLFNQVLPDVAVFGKKDYQQLVVI RQMVVDLAFPIEILGGCIVRESDGLAMSSRNQYLSMQQRPQAAEIHRTLIAMRDAVMSGGVHADVEAEAVRRLEAAGFQV DYAVIRLPDLCEPIDGIVISQGIALVAARLGNTRLIDNLEF
Sequences:
>Translated_281_residues MIDTVTDLSRLRGIVADWRRQGLRVALVPTMGNLHAGHFSLVMLARHYADRVVSSVFVNPTQFGPHEDFQRYPRTPEADM RGLEHVGCDVLWLPSVETMYPLGTERTVRLFIPCVSDVLEGTFRPGHFEGVCTVVARLFNQVLPDVAVFGKKDYQQLVVI RQMVVDLAFPIEILGGCIVRESDGLAMSSRNQYLSMQQRPQAAEIHRTLIAMRDAVMSGGVHADVEAEAVRRLEAAGFQV DYAVIRLPDLCEPIDGIVISQGIALVAARLGNTRLIDNLEF >Mature_281_residues MIDTVTDLSRLRGIVADWRRQGLRVALVPTMGNLHAGHFSLVMLARHYADRVVSSVFVNPTQFGPHEDFQRYPRTPEADM RGLEHVGCDVLWLPSVETMYPLGTERTVRLFIPCVSDVLEGTFRPGHFEGVCTVVARLFNQVLPDVAVFGKKDYQQLVVI RQMVVDLAFPIEILGGCIVRESDGLAMSSRNQYLSMQQRPQAAEIHRTLIAMRDAVMSGGVHADVEAEAVRRLEAAGFQV DYAVIRLPDLCEPIDGIVISQGIALVAARLGNTRLIDNLEF
Specific function: Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
COG id: COG0414
COG function: function code H; Panthothenate synthetase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pantothenate synthetase family
Homologues:
Organism=Escherichia coli, GI1786325, Length=275, Percent_Identity=46.1818181818182, Blast_Score=228, Evalue=3e-61, Organism=Saccharomyces cerevisiae, GI6322046, Length=215, Percent_Identity=41.8604651162791, Blast_Score=157, Evalue=3e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PANC_XYLF2 (B2I721)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001828905.1 - ProteinModelPortal: B2I721 - SMR: B2I721 - GeneID: 6204093 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_0174 - HOGENOM: HBG428839 - OMA: RLIDNFT - ProtClustDB: PRK00380 - GO: GO:0005737 - HAMAP: MF_00158 - InterPro: IPR003721 - InterPro: IPR014729 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR21299:SF1 - TIGRFAMs: TIGR00018
Pfam domain/function: PF02569 Pantoate_ligase
EC number: =6.3.2.1
Molecular weight: Translated: 31268; Mature: 31268
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: ACT_SITE 38-38 BINDING 62-62 BINDING 62-62 BINDING 156-156 BINDING 179-179
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDTVTDLSRLRGIVADWRRQGLRVALVPTMGNLHAGHFSLVMLARHYADRVVSSVFVNP CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TQFGPHEDFQRYPRTPEADMRGLEHVGCDVLWLPSVETMYPLGTERTVRLFIPCVSDVLE CCCCCCHHHHHCCCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCEEEEHHHHHHHHHH GTFRPGHFEGVCTVVARLFNQVLPDVAVFGKKDYQQLVVIRQMVVDLAFPIEILGGCIVR CCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE ESDGLAMSSRNQYLSMQQRPQAAEIHRTLIAMRDAVMSGGVHADVEAEAVRRLEAAGFQV CCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEE DYAVIRLPDLCEPIDGIVISQGIALVAARLGNTRLIDNLEF EHHEEECCHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MIDTVTDLSRLRGIVADWRRQGLRVALVPTMGNLHAGHFSLVMLARHYADRVVSSVFVNP CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TQFGPHEDFQRYPRTPEADMRGLEHVGCDVLWLPSVETMYPLGTERTVRLFIPCVSDVLE CCCCCCHHHHHCCCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCEEEEHHHHHHHHHH GTFRPGHFEGVCTVVARLFNQVLPDVAVFGKKDYQQLVVIRQMVVDLAFPIEILGGCIVR CCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE ESDGLAMSSRNQYLSMQQRPQAAEIHRTLIAMRDAVMSGGVHADVEAEAVRRLEAAGFQV CCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEE DYAVIRLPDLCEPIDGIVISQGIALVAARLGNTRLIDNLEF EHHEEECCHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA