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The map label for this gene is ycfJ [H]

Identifier: 182680705

GI number: 182680705

Start: 187101

End: 187874

Strand: Direct

Name: ycfJ [H]

Synonym: XfasM23_0134

Alternate gene names: 182680705

Gene position: 187101-187874 (Clockwise)

Preceding gene: 182680702

Following gene: 182680713

Centisome position: 7.38

GC content: 48.45

Gene sequence:

>774_bases
ATGAACAATCAGATGAGGATAGTTTTAATAGCTTTGGGAGCATTGTTATTAGGTGGAGTAGCAACAGCTGCTTTCATGAA
TAACCGTGGCCATGACGCCGGTTATATGGCGAATCGACATTCAGACAGCCATACGGCATTTGAGTATGCGGACATCATAC
GTGTTGATACGATTACCGAGAAAAAGACGCTGTATGCTCAAGTCGTGTCAGTCGATCCGATTCGCGACACGGCCAGGATG
ATGGCACCGCGTGAGATATGCCGTGATGTGCTAGTGCAGCATCATCTCCCTGAGCGTGATGGCAACGTTGGTGGTACAGC
AATCGGTGCATTGATTGGCGGTTTGGTTGGCAATCAATTTGGTCATGGTAACGGTCGTAAGGCATTAACTGCTGCGGGTG
CGGTTGCTGGTGGTTTCATAGGAAATGAGGTGGATCGCGAGCATGTTGGCGGGCGTGTGGTAGAGCGTATTGAACGGCGC
TGTCATTCTGAAAACTCTATGGTCCAATCAAGTCATGTCAGTGGCTATACTGTGATCTATCGTAAGGATGACGGTACTAC
TGGGACACTACACATGGCCAATAGGCCGGGAGATCATGTTGAGCTTGGCCAGACAGATAATGTGGTGGGTTACGACGTGA
CTTATCTTTACAATGGTCAAGAGAAAACAGTGCGTCTGAATGAGAAACCACTTGGAAATCAGTTGCCCCTCGTGGATGGA
CATTTGGTTAACCACACAACAGCCACGGCAGACCATTCCGTTAACATTCAGTAA

Upstream 100 bases:

>100_bases
ATTTAACGTCGGGGGCGAAGGGATTCATTGCTATTCGTTCAGGTTTGTCGTGCTGGAATACCATTGTGAACCAAGTGTCT
AGGTGCCCTAGGAATATTTT

Downstream 100 bases:

>100_bases
CCTAGACTTTTGGTCGTCTTGAGTGTGGTATTTGGATTAGGTGCACTACCACCTAAATCGCGGCGTACCAATATGGCTGC
TCACCAACGAGTTGTATCGT

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNNQMRIVLIALGALLLGGVATAAFMNNRGHDAGYMANRHSDSHTAFEYADIIRVDTITEKKTLYAQVVSVDPIRDTARM
MAPREICRDVLVQHHLPERDGNVGGTAIGALIGGLVGNQFGHGNGRKALTAAGAVAGGFIGNEVDREHVGGRVVERIERR
CHSENSMVQSSHVSGYTVIYRKDDGTTGTLHMANRPGDHVELGQTDNVVGYDVTYLYNGQEKTVRLNEKPLGNQLPLVDG
HLVNHTTATADHSVNIQ

Sequences:

>Translated_257_residues
MNNQMRIVLIALGALLLGGVATAAFMNNRGHDAGYMANRHSDSHTAFEYADIIRVDTITEKKTLYAQVVSVDPIRDTARM
MAPREICRDVLVQHHLPERDGNVGGTAIGALIGGLVGNQFGHGNGRKALTAAGAVAGGFIGNEVDREHVGGRVVERIERR
CHSENSMVQSSHVSGYTVIYRKDDGTTGTLHMANRPGDHVELGQTDNVVGYDVTYLYNGQEKTVRLNEKPLGNQLPLVDG
HLVNHTTATADHSVNIQ
>Mature_257_residues
MNNQMRIVLIALGALLLGGVATAAFMNNRGHDAGYMANRHSDSHTAFEYADIIRVDTITEKKTLYAQVVSVDPIRDTARM
MAPREICRDVLVQHHLPERDGNVGGTAIGALIGGLVGNQFGHGNGRKALTAAGAVAGGFIGNEVDREHVGGRVVERIERR
CHSENSMVQSSHVSGYTVIYRKDDGTTGTLHMANRPGDHVELGQTDNVVGYDVTYLYNGQEKTVRLNEKPLGNQLPLVDG
HLVNHTTATADHSVNIQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=146, Percent_Identity=34.9315068493151, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 27813; Mature: 27813

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQMRIVLIALGALLLGGVATAAFMNNRGHDAGYMANRHSDSHTAFEYADIIRVDTITE
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCC
KKTLYAQVVSVDPIRDTARMMAPREICRDVLVQHHLPERDGNVGGTAIGALIGGLVGNQF
HHEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
GHGNGRKALTAAGAVAGGFIGNEVDREHVGGRVVERIERRCHSENSMVQSSHVSGYTVIY
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCHHHHCCCCCEEEEE
RKDDGTTGTLHMANRPGDHVELGQTDNVVGYDVTYLYNGQEKTVRLNEKPLGNQLPLVDG
ECCCCCEEEEEECCCCCCCEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCC
HLVNHTTATADHSVNIQ
EEECCEECCCCCEEECC
>Mature Secondary Structure
MNNQMRIVLIALGALLLGGVATAAFMNNRGHDAGYMANRHSDSHTAFEYADIIRVDTITE
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCC
KKTLYAQVVSVDPIRDTARMMAPREICRDVLVQHHLPERDGNVGGTAIGALIGGLVGNQF
HHEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
GHGNGRKALTAAGAVAGGFIGNEVDREHVGGRVVERIERRCHSENSMVQSSHVSGYTVIY
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCHHHHCCCCCEEEEE
RKDDGTTGTLHMANRPGDHVELGQTDNVVGYDVTYLYNGQEKTVRLNEKPLGNQLPLVDG
ECCCCCEEEEEECCCCCCCEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCC
HLVNHTTATADHSVNIQ
EEECCEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]