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The map label for this gene is yqfA [C]

Identifier: 182680702

GI number: 182680702

Start: 183818

End: 184462

Strand: Direct

Name: yqfA [C]

Synonym: XfasM23_0131

Alternate gene names: 182680702

Gene position: 183818-184462 (Clockwise)

Preceding gene: 182680701

Following gene: 182680705

Centisome position: 7.25

GC content: 49.77

Gene sequence:

>645_bases
ATGAATGCGAATGCTCATTCCTCTATTGATTCACGCGACGAGTTAGCCAGCGCCATCATCCATGGTTTGGGTGCATTGGC
TACGTTGGCTGCTGGATCGGTACTCATTACCCTCGTTTCTATCTACGGTGATAGGTGGCAGTTACTTACCTCAATTGTGT
TCAGTACCACTTTATTCTTGTTGTATGTGGCATCTACCCTGTATCACGCAATTCCACATCCTGGCGCTAAAGCCAGGTTG
CGAGTTTTCGACCACTGCGCAATCTACTTGTTGATTGCTGGTACCTACACCCCGTTCACTTTGATTACTTTGCGTGGTCC
GTGGGGTTGGGGCTTGTTCGCTACAATTTGGACACTGGCATTGAGTGGAGTGGTCTTCAAGCTCTTCTTTACGGAACGTT
TCCGCCTACTTTCGACCATTGTTTATGTGGTCATGGGTTGGTTGGTGGTTATTGCCCTCGGACCATTGCAGCGCTTGCTT
GATGGTTGGACGCTGCGTTGGTTGCTTGCCGGCGGGGTGCTATACACACTTGGCACCTACTTTTATCATCGCGATGAGGT
GCGTTACTTTCATGCGATCTGGCATGTATTTGTGCTTGCTGGGAGCGTCTGCCACTTCATTGCAGTCACTGCTCAGGTCC
TATGA

Upstream 100 bases:

>100_bases
GCTGTAGGCGTCGATTGATTGTGATTTGAGTCATAAAATAAACTCAATGATACCAATATAAGAAAATCCGAATTATTCGC
GGTTATTGTAGCCTATCCTC

Downstream 100 bases:

>100_bases
CAGCGCATGATGGTGTTCTTACCTAGCATCCATGGATTATGTGATTGGACCTAAAGTAATTTGAACAAAGAACCTGACAA
GCGACTCGCTGTTGAGTCAT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNANAHSSIDSRDELASAIIHGLGALATLAAGSVLITLVSIYGDRWQLLTSIVFSTTLFLLYVASTLYHAIPHPGAKARL
RVFDHCAIYLLIAGTYTPFTLITLRGPWGWGLFATIWTLALSGVVFKLFFTERFRLLSTIVYVVMGWLVVIALGPLQRLL
DGWTLRWLLAGGVLYTLGTYFYHRDEVRYFHAIWHVFVLAGSVCHFIAVTAQVL

Sequences:

>Translated_214_residues
MNANAHSSIDSRDELASAIIHGLGALATLAAGSVLITLVSIYGDRWQLLTSIVFSTTLFLLYVASTLYHAIPHPGAKARL
RVFDHCAIYLLIAGTYTPFTLITLRGPWGWGLFATIWTLALSGVVFKLFFTERFRLLSTIVYVVMGWLVVIALGPLQRLL
DGWTLRWLLAGGVLYTLGTYFYHRDEVRYFHAIWHVFVLAGSVCHFIAVTAQVL
>Mature_214_residues
MNANAHSSIDSRDELASAIIHGLGALATLAAGSVLITLVSIYGDRWQLLTSIVFSTTLFLLYVASTLYHAIPHPGAKARL
RVFDHCAIYLLIAGTYTPFTLITLRGPWGWGLFATIWTLALSGVVFKLFFTERFRLLSTIVYVVMGWLVVIALGPLQRLL
DGWTLRWLLAGGVLYTLGTYFYHRDEVRYFHAIWHVFVLAGSVCHFIAVTAQVL

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=215, Percent_Identity=28.8372093023256, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI52630445, Length=215, Percent_Identity=26.9767441860465, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI154759277, Length=229, Percent_Identity=26.6375545851528, Blast_Score=82, Evalue=4e-16,
Organism=Escherichia coli, GI1789266, Length=198, Percent_Identity=44.4444444444444, Blast_Score=168, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI71996356, Length=214, Percent_Identity=32.7102803738318, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24640324, Length=225, Percent_Identity=28.8888888888889, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23846; Mature: 23846

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANAHSSIDSRDELASAIIHGLGALATLAAGSVLITLVSIYGDRWQLLTSIVFSTTLFL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LYVASTLYHAIPHPGAKARLRVFDHCAIYLLIAGTYTPFTLITLRGPWGWGLFATIWTLA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
LSGVVFKLFFTERFRLLSTIVYVVMGWLVVIALGPLQRLLDGWTLRWLLAGGVLYTLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FYHRDEVRYFHAIWHVFVLAGSVCHFIAVTAQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNANAHSSIDSRDELASAIIHGLGALATLAAGSVLITLVSIYGDRWQLLTSIVFSTTLFL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LYVASTLYHAIPHPGAKARLRVFDHCAIYLLIAGTYTPFTLITLRGPWGWGLFATIWTLA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
LSGVVFKLFFTERFRLLSTIVYVVMGWLVVIALGPLQRLLDGWTLRWLLAGGVLYTLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FYHRDEVRYFHAIWHVFVLAGSVCHFIAVTAQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]