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The map label for this gene is csrA

Identifier: 182680659

GI number: 182680659

Start: 121993

End: 122208

Strand: Direct

Name: csrA

Synonym: XfasM23_0088

Alternate gene names: 182680659

Gene position: 121993-122208 (Clockwise)

Preceding gene: 182680658

Following gene: 182680662

Centisome position: 4.81

GC content: 49.07

Gene sequence:

>216_bases
ATGTTGATCCTGACTCGTCGTTCTGGTGAAACGTTGATGATAGGTGATCAGGTCACCGTAACGGTGCTTGGTGTAAAGGG
TAACCAAGTGCGTGTTGGTATCAATGCTCCTAAGCATGTGGCAGTGCATCGTGAAGAGATCTATCATCGTATTCAGCGTG
GTGACGAGCTTGCGTGTTCTTCTGGAACGCGGGGAGATAGCGGCTCTTCCATATAA

Upstream 100 bases:

>100_bases
CCCGTTACCATCTTCCCTTGATCAAGATTAGTGTAGGTCGGTTCTGTTGTGGACCGTTCATTCTGGCTGATAAGATTTCG
GCCCTTTGGAGATTATTAAA

Downstream 100 bases:

>100_bases
TTAAAATGGTGTTTGCGTCGTTTTGGGTTGGCAGGTATCCTTCACAAGCCTATCCGCCTAAAGAGGTGGTTAGTACCCCG
GAGTGATGCCCGAGAGGCCG

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MLILTRRSGETLMIGDQVTVTVLGVKGNQVRVGINAPKHVAVHREEIYHRIQRGDELACSSGTRGDSGSSI

Sequences:

>Translated_71_residues
MLILTRRSGETLMIGDQVTVTVLGVKGNQVRVGINAPKHVAVHREEIYHRIQRGDELACSSGTRGDSGSSI
>Mature_71_residues
MLILTRRSGETLMIGDQVTVTVLGVKGNQVRVGINAPKHVAVHREEIYHRIQRGDELACSSGTRGDSGSSI

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=52, Percent_Identity=86.5384615384615, Blast_Score=96, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_XYLF2 (B2I6K3)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001828819.1
- ProteinModelPortal:   B2I6K3
- SMR:   B2I6K3
- GeneID:   6202868
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0088
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7672; Mature: 7672

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRSGETLMIGDQVTVTVLGVKGNQVRVGINAPKHVAVHREEIYHRIQRGDELACS
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCEEEEEHHHHHHHHHCCCEEEEC
SGTRGDSGSSI
CCCCCCCCCCC
>Mature Secondary Structure
MLILTRRSGETLMIGDQVTVTVLGVKGNQVRVGINAPKHVAVHREEIYHRIQRGDELACS
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCEEEEEHHHHHHHHHCCCEEEEC
SGTRGDSGSSI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA