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The map label for this gene is dapD

Identifier: 182680650

GI number: 182680650

Start: 108561

End: 109463

Strand: Direct

Name: dapD

Synonym: XfasM23_0079

Alternate gene names: 182680650

Gene position: 108561-109463 (Clockwise)

Preceding gene: 182680649

Following gene: 182680651

Centisome position: 4.28

GC content: 54.04

Gene sequence:

>903_bases
ATGACAACCCAACCCCACCTTAAGGAAACCCCACCGCAACAGGTGGATAACAAGGCATCCCCTCCTGTTGTGGATAAGAC
ACTTGTTAGTGCGATTGAAGATGCCTTCGCCCGTTACTCCACACTGACCGTGGAAGAGATCGAAGATTCAATCCGCCCAA
CCGTTAACAGAGTGATCGACGGCCTGGAAACTGGCGCGTTTCGTGTTGCTGAGCCGGATAATCACGGTGGCTGGAAGGTT
AACGAGTGGCTGAAGAAAGCCGTATTGCTGTACTTCCGTGTCCATGACACCACGATCGTTGATGCTCAACCCGCTCCCTT
CTGGGACAAAGTTGAATCACGCTTCTCTGGTTACGATGCAGTGAAATTCCGCGCTGCCGGAGTGCGTGTCGTCCCAGGTG
CGATTGCACGACGTGGTAGCTACTTTGGTAAAGATGTCGTGCTGATGCCAAGCTTCACCAACATTGGTGCTTATGTGGGT
GAAGGCACCATGATTGACACCTGGGCAACCGTTGGTTCCTGTGCACAGCTTGGCGCCCACTGCCATCTTTCTGGCGGTGC
GGCGATTGGTGGCGTACTCGAACCATTGCAAGCCAGCCCCGCCATCATCGAAGACCATTGCTTCATTGGTGCCCGTTCGG
AAGTGGTGGAGGGTGTGATCGTGGGTCATCACAGTGTGATTGGCATGGGTGTGTTCATTAGCCAAAGTACCCGGATCTAC
AACCGTGCCACTGGCGAAATCAGTTACGGTTATGTGCCGCCTTACAGCGTTGTGGTGTCTGGCCAGCTTCCAGCAAAGGA
TGGGACGCACTCCCTGTACTGCGCGGTGATTGTCAAGCAGGTGGACGAAAAAACACGTGCCAAGACCAGTATCAACGAGC
TTCTGCGTGGTTTGGCAGATTGA

Upstream 100 bases:

>100_bases
ACGAACACGTCCCTACATCATTCGCATCCTCCCCGTAGCAGCACTTGCATGATGCACTGCTGGGTGGCCTCCACATCTCA
CATTTTAGCCAGGAGCCTCT

Downstream 100 bases:

>100_bases
TTGGAATAATACATATGACCACACTTTATGGATTGAAAAACTGCGATACCTGCAAGAAGGCGAATAAATGGCTGGATCGC
TTCAGCATCGCTTACGTTTT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTTQPHLKETPPQQVDNKASPPVVDKTLVSAIEDAFARYSTLTVEEIEDSIRPTVNRVIDGLETGAFRVAEPDNHGGWKV
NEWLKKAVLLYFRVHDTTIVDAQPAPFWDKVESRFSGYDAVKFRAAGVRVVPGAIARRGSYFGKDVVLMPSFTNIGAYVG
EGTMIDTWATVGSCAQLGAHCHLSGGAAIGGVLEPLQASPAIIEDHCFIGARSEVVEGVIVGHHSVIGMGVFISQSTRIY
NRATGEISYGYVPPYSVVVSGQLPAKDGTHSLYCAVIVKQVDEKTRAKTSINELLRGLAD

Sequences:

>Translated_300_residues
MTTQPHLKETPPQQVDNKASPPVVDKTLVSAIEDAFARYSTLTVEEIEDSIRPTVNRVIDGLETGAFRVAEPDNHGGWKV
NEWLKKAVLLYFRVHDTTIVDAQPAPFWDKVESRFSGYDAVKFRAAGVRVVPGAIARRGSYFGKDVVLMPSFTNIGAYVG
EGTMIDTWATVGSCAQLGAHCHLSGGAAIGGVLEPLQASPAIIEDHCFIGARSEVVEGVIVGHHSVIGMGVFISQSTRIY
NRATGEISYGYVPPYSVVVSGQLPAKDGTHSLYCAVIVKQVDEKTRAKTSINELLRGLAD
>Mature_299_residues
TTQPHLKETPPQQVDNKASPPVVDKTLVSAIEDAFARYSTLTVEEIEDSIRPTVNRVIDGLETGAFRVAEPDNHGGWKVN
EWLKKAVLLYFRVHDTTIVDAQPAPFWDKVESRFSGYDAVKFRAAGVRVVPGAIARRGSYFGKDVVLMPSFTNIGAYVGE
GTMIDTWATVGSCAQLGAHCHLSGGAAIGGVLEPLQASPAIIEDHCFIGARSEVVEGVIVGHHSVIGMGVFISQSTRIYN
RATGEISYGYVPPYSVVVSGQLPAKDGTHSLYCAVIVKQVDEKTRAKTSINELLRGLAD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=60.1476014760148, Blast_Score=313, Evalue=1e-86,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 32383; Mature: 32252

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQPHLKETPPQQVDNKASPPVVDKTLVSAIEDAFARYSTLTVEEIEDSIRPTVNRVID
CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHH
GLETGAFRVAEPDNHGGWKVNEWLKKAVLLYFRVHDTTIVDAQPAPFWDKVESRFSGYDA
HHCCCCEEEECCCCCCCCCHHHHHHHHHHEEEEECCCEEECCCCCCHHHHHHHHHCCCCE
VKFRAAGVRVVPGAIARRGSYFGKDVVLMPSFTNIGAYVGEGTMIDTWATVGSCAQLGAH
EEEEECCEEECCHHHHHCCCCCCCCEEEECCCHHCCHHHCCCCEEEHHHHHHHHHHHCCE
CHLSGGAAIGGVLEPLQASPAIIEDHCFIGARSEVVEGVIVGHHSVIGMGVFISQSTRIY
EEECCCCHHHHHHHHHCCCCCEEECCEEECCHHHHHHHHHCCCCHHEEEEEEEECCCEEE
NRATGEISYGYVPPYSVVVSGQLPAKDGTHSLYCAVIVKQVDEKTRAKTSINELLRGLAD
ECCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTQPHLKETPPQQVDNKASPPVVDKTLVSAIEDAFARYSTLTVEEIEDSIRPTVNRVID
CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHH
GLETGAFRVAEPDNHGGWKVNEWLKKAVLLYFRVHDTTIVDAQPAPFWDKVESRFSGYDA
HHCCCCEEEECCCCCCCCCHHHHHHHHHHEEEEECCCEEECCCCCCHHHHHHHHHCCCCE
VKFRAAGVRVVPGAIARRGSYFGKDVVLMPSFTNIGAYVGEGTMIDTWATVGSCAQLGAH
EEEEECCEEECCHHHHHCCCCCCCCEEEECCCHHCCHHHCCCCEEEHHHHHHHHHHHCCE
CHLSGGAAIGGVLEPLQASPAIIEDHCFIGARSEVVEGVIVGHHSVIGMGVFISQSTRIY
EEECCCCHHHHHHHHHCCCCCEEECCEEECCHHHHHHHHHCCCCHHEEEEEEEECCCEEE
NRATGEISYGYVPPYSVVVSGQLPAKDGTHSLYCAVIVKQVDEKTRAKTSINELLRGLAD
ECCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]