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The map label for this gene is mrkD [H]

Identifier: 182680622

GI number: 182680622

Start: 76217

End: 77281

Strand: Reverse

Name: mrkD [H]

Synonym: XfasM23_0050

Alternate gene names: 182680622

Gene position: 77281-76217 (Counterclockwise)

Preceding gene: 182680623

Following gene: 182680618

Centisome position: 3.05

GC content: 49.3

Gene sequence:

>1065_bases
ATGTCGATAGTCAACACGATTAGTGTCGCGCACATCTCTACATACCAGCAACGGACTTTAAAAATAATAGCAGCGTGCCT
AACGATGCTAATCGCACCTCACGTTCAGGCAACTTGCACCATCAAGGAAGGCATAGTCGCGCAAAACATCGACTTTGGTG
CAGGCCGCATTCTGATCCAACCCTCACTGGCTATCGGTGATCGTATTGCTCTGTTAACCCATAATATTAATCGCGTCGAC
AGATATGGAACATGTGTCAATAACGGGATCATGTACGGCGCTTTCACTCGTTCAATGACCCCCGTCAGCGGCATGAAGAA
TGTTTATGCGACCGATGTTGCAGGCGTAGGAATCAGACTCTACCGGGAAGCGGGCAAAGTATCCAATTTCTACCCTCACA
CATTGAATTCTAATAATCCCCCCGGTAGAGTCACTAATCTCAGCCTCAACGAAGGATATTTCCAAGTTGAACTGATCAAG
ACCGCCACCACCACCGGCTCAGGGCCAATTGCAAGCGCTGGGCCATTCACTACTTACTATGCGGATGGCAGTGGCATCAG
TCGCCCGATACTAACATCCTCACTCAGTGGGATCGGTATTACCATTGTTACCTCAACATGTCAGGTCGATGCTGGATCAA
AGAACATCGCTGTCAATTTCGGCTCGGTATCCAGTAACACCTTTAAAGGACTCGGCTCCAAAGGGCCCGAGCGTGACTTT
ACTATCAATTTGATATGCCATGGAGGCAATGTGACCGAAGCCGATCAGGCACAAATATCTGTGCGTATTGATGGCACACA
GGATAGCTCCGGGCAATCTGGGGTACTTGCCATCACTTCAGCCAGCGACGCAGCCAGCAATATAGGCATTGAATTAGTAG
ACCTCCTAACTGGAAGTGAACGTCAGGTGGTGTTTGGGCAAGCTATCACACTAGGCCGGACCGCTATCAACGCTAGCAGT
ACATTGAGCCTGCCAATGCGGGCCAGATATATCCAAACGCAAACAGGAAAAGTAGGCCCAGGTGCAGCAAAAGGAACGGC
AACCTTCACGATTGAATACCAGTAA

Upstream 100 bases:

>100_bases
GCATAACCAACCGACAAAACAATGGCATACAGACATCAGCATCCTCCACAAGAGGATGAGATCGCTTTAAGCCTAGAAAT
TTCACAACTTTGGAAACCAT

Downstream 100 bases:

>100_bases
CAAAGCGCATTCAAAGCGTTTTCAAAATTTACAAGATGATCAAAAAACGAATGTCAAAATACACATTAAGCTGTAAAGAA
AATCGCCAAGCAAACCAATT

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MSIVNTISVAHISTYQQRTLKIIAACLTMLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVD
RYGTCVNNGIMYGAFTRSMTPVSGMKNVYATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIK
TATTTGSGPIASAGPFTTYYADGSGISRPILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDF
TINLICHGGNVTEADQAQISVRIDGTQDSSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASS
TLSLPMRARYIQTQTGKVGPGAAKGTATFTIEYQ

Sequences:

>Translated_354_residues
MSIVNTISVAHISTYQQRTLKIIAACLTMLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVD
RYGTCVNNGIMYGAFTRSMTPVSGMKNVYATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIK
TATTTGSGPIASAGPFTTYYADGSGISRPILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDF
TINLICHGGNVTEADQAQISVRIDGTQDSSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASS
TLSLPMRARYIQTQTGKVGPGAAKGTATFTIEYQ
>Mature_353_residues
SIVNTISVAHISTYQQRTLKIIAACLTMLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDR
YGTCVNNGIMYGAFTRSMTPVSGMKNVYATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKT
ATTTGSGPIASAGPFTTYYADGSGISRPILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFT
INLICHGGNVTEADQAQISVRIDGTQDSSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASST
LSLPMRARYIQTQTGKVGPGAAKGTATFTIEYQ

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 37095; Mature: 36963

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVNTISVAHISTYQQRTLKIIAACLTMLIAPHVQATCTIKEGIVAQNIDFGAGRILIQ
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCEEEEE
PSLAIGDRIALLTHNINRVDRYGTCVNNGIMYGAFTRSMTPVSGMKNVYATDVAGVGIRL
CCCCCCCEEEEEECCCHHHHHHCHHHHCCEEEEEEECCCCCCHHCCCEEEECCCCCCEEE
YREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKTATTTGSGPIASAGPFTTYY
EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEE
ADGSGISRPILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDF
ECCCCCCCCHHHHCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCE
TINLICHGGNVTEADQAQISVRIDGTQDSSGQSGVLAITSASDAASNIGIELVDLLTGSE
EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCC
RQVVFGQAITLGRTAINASSTLSLPMRARYIQTQTGKVGPGAAKGTATFTIEYQ
CEEEEEEEEEECCEEECCCCEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SIVNTISVAHISTYQQRTLKIIAACLTMLIAPHVQATCTIKEGIVAQNIDFGAGRILIQ
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCEEEEE
PSLAIGDRIALLTHNINRVDRYGTCVNNGIMYGAFTRSMTPVSGMKNVYATDVAGVGIRL
CCCCCCCEEEEEECCCHHHHHHCHHHHCCEEEEEEECCCCCCHHCCCEEEECCCCCCEEE
YREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKTATTTGSGPIASAGPFTTYY
EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEE
ADGSGISRPILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDF
ECCCCCCCCHHHHCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCE
TINLICHGGNVTEADQAQISVRIDGTQDSSGQSGVLAITSASDAASNIGIELVDLLTGSE
EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCC
RQVVFGQAITLGRTAINASSTLSLPMRARYIQTQTGKVGPGAAKGTATFTIEYQ
CEEEEEEEEEECCEEECCCCEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1670938; 2563996 [H]