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The map label for this gene is ypjD [H]

Identifier: 182680618

GI number: 182680618

Start: 72071

End: 72862

Strand: Reverse

Name: ypjD [H]

Synonym: XfasM23_0046

Alternate gene names: 182680618

Gene position: 72862-72071 (Counterclockwise)

Preceding gene: 182680622

Following gene: 182680616

Centisome position: 2.87

GC content: 48.48

Gene sequence:

>792_bases
ATGCTGTTTTGTGAGTTGTTATTTAATGATATTTCGCGCAGAGGTGAGTGGCGTATTCCGGGGCTGGTGGGTCTATTAGC
TCACGGGGGTTATCATTTTTTGGTGGTATTAGGCAATGCTGGTGCTGTGGACATGCATTTTTTCTCTGTTCTTTCTATGA
CGTTTTTTGTGATGTCTGGCTTGACAATTTTATTTAGTACGCATGTGGGGACGGTGGGTGTGGTGGTGTTCCCTGTGGCG
GGGTTATTGCTTGCTGTTTATCACGGTTACGGTCACTCACCCAGCCCGGAACTGGGTTGGCGTGTAGAGCTGCATGCTTG
TCTAGCGTTACTAGGCTATGCGACGTTAGGCATAGCAGCACTATTGGCGATGATGTTGTGGTTTCGGGAACGTGCGTTGC
GGCGACGCAATGTTCACCACTGGCATGGTGCTCTGCCGCCGCTGACTGAGTTAGAGAAGCTGCTTTTCCGCACGATCACG
TTTGGTTTCATCCTGTTGACCTTCACTGTATTCACTGGTTTTTTGTTTGTGAGAGACTTTCTGGAACAGAAGTTGTTGCA
TAAGAGTGTGCTAAGTGTTCTGTCCTGGGTGATATTTGGAGGGTTGTTAATTGGACGCTGGCAGTATGGCTGGCGAGGCA
TCAAGGCGGTGCACTGGACATTAACAGCGATGATGTTTTTAGTACTGGCGTTTTTTGGGAGCAAACTGATGATTGAGCTC
ATGCTACGTCACCAAAGCAGTTCATTATCACCCGTCAGGCACGCGTCATACGGAGAGCAAGGATTGAGATAA

Upstream 100 bases:

>100_bases
GACTCCTCTGTCAGTCCTGCCCAAAGGTTTACATTATGTGAGGTGATAATTGTTGTTATTGGTTATTATTGTTTTTTTTA
CATATTTTTTAGCGGTATGG

Downstream 100 bases:

>100_bases
GCACGGTGTACTTGAGAAGCTAGCACCTCTGTCATCGGGCTCGGTAGTGGATAAGGATGATCACCTACGACACCCAACAA
TGATCATCGCTACCTGGTGG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTILFSTHVGTVGVVVFPVA
GLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHGALPPLTELEKLLFRTIT
FGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTAMMFLVLAFFGSKLMIEL
MLRHQSSSLSPVRHASYGEQGLR

Sequences:

>Translated_263_residues
MLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTILFSTHVGTVGVVVFPVA
GLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHGALPPLTELEKLLFRTIT
FGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTAMMFLVLAFFGSKLMIEL
MLRHQSSSLSPVRHASYGEQGLR
>Mature_263_residues
MLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTILFSTHVGTVGVVVFPVA
GLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHGALPPLTELEKLLFRTIT
FGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTAMMFLVLAFFGSKLMIEL
MLRHQSSSLSPVRHASYGEQGLR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=241, Percent_Identity=27.8008298755187, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29661; Mature: 29661

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure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HHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]