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The map label for this gene is ylbK [H]

Identifier: 182680614

GI number: 182680614

Start: 58909

End: 59949

Strand: Direct

Name: ylbK [H]

Synonym: XfasM23_0042

Alternate gene names: 182680614

Gene position: 58909-59949 (Clockwise)

Preceding gene: 182680613

Following gene: 182680615

Centisome position: 2.32

GC content: 50.91

Gene sequence:

>1041_bases
ATGTGTTTTACTTTTCGATGTTCATTTTGGGCGACCATTGTGGTTGCCTTGTTGACTGCTTGCAGTAGCGCGCCGCGTTC
GGCTTCACGGTTGTCTTCTGTATCTCAGTCGTCCGACATATCGTTGCCACCGCTGCGAATCGGTATTGCACTGGGTGGCG
GTGCGGCCAAGGGTTTCGCCCATATTGGTGTTCTCAAGATGTTGGAAGCCAATGGGTTAGCTCCAAGTGTGGTTGCGGGT
ACCAGTGCTGGTAGTGTGGTTGGCGCGCTATACGCCAGCGGCATGGACTCGTTCAAGATACAAACAAAAGCGGTTGCTAT
GGATGAGAGTAATATTCGTGACTTGCGTTTTTTCTCGGGTGGCTTGGTACAGGGGCAGAAACTTCAAAACTATGTCAATG
AACTAGTAGGTAAACGTCCAATCGAAAAGCTGAACATGCCATTCGGGGCGATCGCCACGCGGTTAGAGGATGGGCAACGT
ACGATGTTTGTACGCGGGAATGTCGGTGAGGCAGTGCGTGCTTCCTGTAGCATCCCAGGTGTATTTGAGCCTGTCACTAT
TGGGGCATACCACTATGTGGATGGTGGTATCACTAGTCCGGTACCAGTGGATGCGGTACGTCAATTGGGTGCTGATTTCG
TCATTGCGGTAGATATTTCCAGCAAAGCCACTGGTAAGAATCCTGGGGGATTGGTCGGTACGGTGAATCAGTCGATTTCG
ATTATGGGCCAGCATTTGGGTGAGGCAGAACTTAAGCGCGCTAATATCGTGATCCACCCCAAGGTGCTGGACATTGGTTC
GACTGACTTTGATCAACGTAATGCTGCGATCTTGGAAGGTGAGCGTGCCACGATTGCAGTCATCCCAGAGATCCGTGAGA
AACTTGCTCAACTTCATCAGCAGCGTATCCAGGCTGCACGTAAAACGGCCAACCAGTCTGCTATAGAAGCGGTTGAGTCG
TACCGACGTTGTCAGAATACCCGTACGCGTTGGGAAAAGCTGCGTGGTAAGGAAAAGGATTGCACTAAGTCATCTCTTTG
A

Upstream 100 bases:

>100_bases
TACGTGTAGCAGGGATATCCTGAACCGTGTTTTGTGGCGTAGAGTTGTCAGTGGATGTAACCGTTATCCTGTCCATCTTT
CTTATCTTGCACTATCTAAC

Downstream 100 bases:

>100_bases
ATATTGAATTGACTTAGTGGCCAGTCTCTGGGGTATATGGGTTAGGTTGGGTGTTTTAGAGGCTTAGCTATATCAGTGGT
CCTAGATACAGTCTTTGGGT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MCFTFRCSFWATIVVALLTACSSAPRSASRLSSVSQSSDISLPPLRIGIALGGGAAKGFAHIGVLKMLEANGLAPSVVAG
TSAGSVVGALYASGMDSFKIQTKAVAMDESNIRDLRFFSGGLVQGQKLQNYVNELVGKRPIEKLNMPFGAIATRLEDGQR
TMFVRGNVGEAVRASCSIPGVFEPVTIGAYHYVDGGITSPVPVDAVRQLGADFVIAVDISSKATGKNPGGLVGTVNQSIS
IMGQHLGEAELKRANIVIHPKVLDIGSTDFDQRNAAILEGERATIAVIPEIREKLAQLHQQRIQAARKTANQSAIEAVES
YRRCQNTRTRWEKLRGKEKDCTKSSL

Sequences:

>Translated_346_residues
MCFTFRCSFWATIVVALLTACSSAPRSASRLSSVSQSSDISLPPLRIGIALGGGAAKGFAHIGVLKMLEANGLAPSVVAG
TSAGSVVGALYASGMDSFKIQTKAVAMDESNIRDLRFFSGGLVQGQKLQNYVNELVGKRPIEKLNMPFGAIATRLEDGQR
TMFVRGNVGEAVRASCSIPGVFEPVTIGAYHYVDGGITSPVPVDAVRQLGADFVIAVDISSKATGKNPGGLVGTVNQSIS
IMGQHLGEAELKRANIVIHPKVLDIGSTDFDQRNAAILEGERATIAVIPEIREKLAQLHQQRIQAARKTANQSAIEAVES
YRRCQNTRTRWEKLRGKEKDCTKSSL
>Mature_346_residues
MCFTFRCSFWATIVVALLTACSSAPRSASRLSSVSQSSDISLPPLRIGIALGGGAAKGFAHIGVLKMLEANGLAPSVVAG
TSAGSVVGALYASGMDSFKIQTKAVAMDESNIRDLRFFSGGLVQGQKLQNYVNELVGKRPIEKLNMPFGAIATRLEDGQR
TMFVRGNVGEAVRASCSIPGVFEPVTIGAYHYVDGGITSPVPVDAVRQLGADFVIAVDISSKATGKNPGGLVGTVNQSIS
IMGQHLGEAELKRANIVIHPKVLDIGSTDFDQRNAAILEGERATIAVIPEIREKLAQLHQQRIQAARKTANQSAIEAVES
YRRCQNTRTRWEKLRGKEKDCTKSSL

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI116256487, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI260656039, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI260656043, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI260656037, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=31.5217391304348, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=30.9782608695652, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI226510936, Length=300, Percent_Identity=32.3333333333333, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=29.5180722891566, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=29.5180722891566, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=181, Percent_Identity=30.939226519337, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=30.9782608695652, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571388, Length=184, Percent_Identity=28.804347826087, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36901; Mature: 36901

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFTFRCSFWATIVVALLTACSSAPRSASRLSSVSQSSDISLPPLRIGIALGGGAAKGFA
CEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHH
HIGVLKMLEANGLAPSVVAGTSAGSVVGALYASGMDSFKIQTKAVAMDESNIRDLRFFSG
HHHHHHHHHHCCCCCHHEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHCC
GLVQGQKLQNYVNELVGKRPIEKLNMPFGAIATRLEDGQRTMFVRGNVGEAVRASCSIPG
CCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHCCCCCC
VFEPVTIGAYHYVDGGITSPVPVDAVRQLGADFVIAVDISSKATGKNPGGLVGTVNQSIS
CCCCEEECEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEECCHHHH
IMGQHLGEAELKRANIVIHPKVLDIGSTDFDQRNAAILEGERATIAVIPEIREKLAQLHQ
HHHHHCCHHHHHHCCEEEECEEEECCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHH
QRIQAARKTANQSAIEAVESYRRCQNTRTRWEKLRGKEKDCTKSSL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MCFTFRCSFWATIVVALLTACSSAPRSASRLSSVSQSSDISLPPLRIGIALGGGAAKGFA
CEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHH
HIGVLKMLEANGLAPSVVAGTSAGSVVGALYASGMDSFKIQTKAVAMDESNIRDLRFFSG
HHHHHHHHHHCCCCCHHEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHCC
GLVQGQKLQNYVNELVGKRPIEKLNMPFGAIATRLEDGQRTMFVRGNVGEAVRASCSIPG
CCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHCCCCCC
VFEPVTIGAYHYVDGGITSPVPVDAVRQLGADFVIAVDISSKATGKNPGGLVGTVNQSIS
CCCCEEECEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEECCHHHH
IMGQHLGEAELKRANIVIHPKVLDIGSTDFDQRNAAILEGERATIAVIPEIREKLAQLHQ
HHHHHCCHHHHHHCCEEEECEEEECCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHH
QRIQAARKTANQSAIEAVESYRRCQNTRTRWEKLRGKEKDCTKSSL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]