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The map label for this gene is yggS [C]

Identifier: 182677225

GI number: 182677225

Start: 265435

End: 266127

Strand: Direct

Name: yggS [C]

Synonym: Bind_0226

Alternate gene names: 182677225

Gene position: 265435-266127 (Clockwise)

Preceding gene: 182677214

Following gene: 182677226

Centisome position: 6.37

GC content: 58.87

Gene sequence:

>693_bases
ATGCATAGTCCGCAGGCGCCGGAACCTCTCCCCGACAACGTGCTTGAACGGCTGGCGGTGATCCGTGGCCATATCGCCCG
CGCGGCGCGCGATGCCGGACGCGCGCCGTCCTCAGTGAACCTTGTTTGCGTTTCCAAAACCTTTCCAGCGGAAGCGATCG
AGCCGGTTCTTTCGGCGGGCGAGCGCATTTTTGGGGAAAATCGGGTGCAGGAGGCCATGGATAAATGGCCTGCCTTGCGC
CCAGCTTATCCTGGCGTCGAACTTCACCTGATTGGCCCCCTGCAATCGAACAAAGCACGCGAGGCGGTGGGTTTTTTTGA
TTGTATCGAGACGGTGGATCGGGAGAAAATCGCCCGCGCCATCGCCGAAGAGATTCAGAAGAGCGGAAAGCATCCGCGCC
TTTATATTCAGGTCAATACCGGCGCCGAGCCGCAAAAGGCCGGCGTTCTGCCGCAAGAGGCTGATTCCTTCATCGAGCAA
TGCCAAAAAGAGTTCGGGCTTGTGATTTCCGGCCTCATGTGCATTCCGCCGGTCGATGATCAGGCCTCTCCGCATTTTGC
TCTGTTAAACAAGATTGCCGAGCGCCACGGCCTTACCAATCTCTCGATGGGCATGAGCGCTGATTATGAACTGGCGATCC
AATTGGGCGCGACCCATGTGCGGATCGGGAGCGCGCTCTTCGGCGCGCGTTGA

Upstream 100 bases:

>100_bases
GATCAATCTTTTGAAAATGAATCTGCTGGTTCCGGTAAACAGCATTATTGGGAAAGCCGGTCAAGGATCAGGCCTTCCGC
TCATCGCGAGGGCTTGAGCC

Downstream 100 bases:

>100_bases
GAGGGGCGATATCTTCAACGCCGAGGCGGATATTCCTCCGTGAGCCTGTCGCGTCAAATTGGAACCTGGCGATAAACTCT
ACCTTTTTGAAAAAGGCATA

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MHSPQAPEPLPDNVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEAMDKWPALR
PAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQ
CQKEFGLVISGLMCIPPVDDQASPHFALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR

Sequences:

>Translated_230_residues
MHSPQAPEPLPDNVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEAMDKWPALR
PAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQ
CQKEFGLVISGLMCIPPVDDQASPHFALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR
>Mature_230_residues
MHSPQAPEPLPDNVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEAMDKWPALR
PAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQ
CQKEFGLVISGLMCIPPVDDQASPHFALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=36.3636363636364, Blast_Score=105, Evalue=2e-23,
Organism=Escherichia coli, GI1789321, Length=230, Percent_Identity=37.8260869565217, Blast_Score=136, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=39.9082568807339, Blast_Score=116, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=213, Percent_Identity=37.5586854460094, Blast_Score=96, Evalue=7e-21,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=35.5450236966825, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24974; Mature: 24974

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPQAPEPLPDNVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
ERIFGENRVQEAMDKWPALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARA
HHHHCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQCQKEFGLVISGLMCIPPVDD
HHHHHHHCCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
QASPHFALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MHSPQAPEPLPDNVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
ERIFGENRVQEAMDKWPALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARA
HHHHCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IAEEIQKSGKHPRLYIQVNTGAEPQKAGVLPQEADSFIEQCQKEFGLVISGLMCIPPVDD
HHHHHHHCCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
QASPHFALLNKIAERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]