Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 17935555
Identifier: 17935555
GI number: 17935555
Start: 1646246
End: 1646785
Strand: Direct
Name: 17935555
Synonym: Atu1660
Alternate gene names: NA
Gene position: 1646246-1646785 (Clockwise)
Preceding gene: 159184861
Following gene: 159184862
Centisome position: 57.93
GC content: 60.56
Gene sequence:
>540_bases GTGGTGGAACGCCGGCAACGTTCGTGGAAAGGACCATTTCGCAAAGCGCCGTGCACGGCCCTTGCGAGATACGGCATGGT GAAAGACCCGGCTGCGCAACGCATCCGACCCACACCAACCTCACCTGAAGCGCAGCCGGGGATCGCCCGGTGCTCTCCAT CCATACCCCGCATGGCAGCGCTGTGCGGGATGAAGCTGTTGGTTTTTGGGGCGTTTTCAGGAAGTGAACGGAAGTGCGTA CGGCTTACCCCCCTCTGCCCTGCCGGGCATCTCCCCCTCAAGGGGGGAGATCGATCTGCGGCGAGGTTCCGCCCCTCTCA ACGTTTGAGGATGAAGCGACAAAAGGGCCTCCTGCTGATCTCCCCCCTTGAGGGGGAGATGCCGGCAGGGCAGAGGGGGG GTAAAGTCCCACCCACCGTCCCTCCGATACGAATCGGACAACCCTCCCGAAAATCCATCCCCAGTTACGAATCCGTCAGA TTATTACGCTACAGATTGACGCAGGCGTTTGTTGCATTGCACACTTACGGGCAAGGCTGA
Upstream 100 bases:
>100_bases ACATCTTCCCCGCTTTTCCCCACCCCGCGCCGCACTGTTAGAGTGAACGCAGTCCTGCCGGGTGAACGCCAGACGTGGCG GAAACTAGAGGACGGTCCTG
Downstream 100 bases:
>100_bases TACGGGAATCACTCCCCATCGTCCAAATGGCATCACGACCATTTCGCGACGACGCCACGCCGGATGCGACATCCGGTATC GAAATATATTCTGTTCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MVERRQRSWKGPFRKAPCTALARYGMVKDPAAQRIRPTPTSPEAQPGIARCSPSIPRMAALCGMKLLVFGAFSGSERKCV RLTPLCPAGHLPLKGGDRSAARFRPSQRLRMKRQKGLLLISPLEGEMPAGQRGGKVPPTVPPIRIGQPSRKSIPSYESVR LLRYRLTQAFVALHTYGQG
Sequences:
>Translated_179_residues MVERRQRSWKGPFRKAPCTALARYGMVKDPAAQRIRPTPTSPEAQPGIARCSPSIPRMAALCGMKLLVFGAFSGSERKCV RLTPLCPAGHLPLKGGDRSAARFRPSQRLRMKRQKGLLLISPLEGEMPAGQRGGKVPPTVPPIRIGQPSRKSIPSYESVR LLRYRLTQAFVALHTYGQG >Mature_179_residues MVERRQRSWKGPFRKAPCTALARYGMVKDPAAQRIRPTPTSPEAQPGIARCSPSIPRMAALCGMKLLVFGAFSGSERKCV RLTPLCPAGHLPLKGGDRSAARFRPSQRLRMKRQKGLLLISPLEGEMPAGQRGGKVPPTVPPIRIGQPSRKSIPSYESVR LLRYRLTQAFVALHTYGQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19698; Mature: 19698
Theoretical pI: Translated: 12.01; Mature: 12.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVERRQRSWKGPFRKAPCTALARYGMVKDPAAQRIRPTPTSPEAQPGIARCSPSIPRMAA CCCCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCHHHHH LCGMKLLVFGAFSGSERKCVRLTPLCPAGHLPLKGGDRSAARFRPSQRLRMKRQKGLLLI HHHHHEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCEEEE SPLEGEMPAGQRGGKVPPTVPPIRIGQPSRKSIPSYESVRLLRYRLTQAFVALHTYGQG ECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVERRQRSWKGPFRKAPCTALARYGMVKDPAAQRIRPTPTSPEAQPGIARCSPSIPRMAA CCCCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCHHHHH LCGMKLLVFGAFSGSERKCVRLTPLCPAGHLPLKGGDRSAARFRPSQRLRMKRQKGLLLI HHHHHEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCEEEE SPLEGEMPAGQRGGKVPPTVPPIRIGQPSRKSIPSYESVRLLRYRLTQAFVALHTYGQG ECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA