Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 17548034

GI number: 17548034

Start: 3579965

End: 3581368

Strand: Reverse

Name: atpD [H]

Synonym: RSc3317

Alternate gene names: 17548034

Gene position: 3581368-3579965 (Counterclockwise)

Preceding gene: 17548035

Following gene: 17548033

Centisome position: 96.37

GC content: 63.89

Gene sequence:

>1404_bases
ATGAGTATCGGAACGATTGTGCAGTGCATCGGCGCCGTGGTGGACATCCAGTTCCCGCGCGACGCGATGCCCAAGGTCTA
CGACGCGCTCGTGCTGCAGGACAGCGGCGAAGCGTCGTTCGCCGAGAAGGGCCTGAGCTTCGAAGTGCAACAACAGCTGG
GCGACGGCGTGGTGCGTACCATTGCGCTGGGTTCGTCGGACGGCCTGCGCCGCGGCATGCCGGTGTCGAACACTGGCGCG
CCGATCTCGGTGCCCGTCGGCCACGGCACGCTGGGCCGCATCATGGACGTGCTGGGTCGCCCGATCGACGAAGCCGGTCC
GATCGCCGCCGATGAAAAGCGCGCGATTCACCAGAAGGCCCCGAAGTTCGACGAACTGTCGCCGTCGGTGGACCTGCTGG
AAACCGGCATCAAGGTGATCGACCTGGTTTGCCCGTTCGCCAAGGGCGGCAAGGTGGGTCTGTTCGGTGGCGCCGGCGTC
GGCAAGACCGTGAACATGATGGAGCTGATCAACAACATCGCCAAGCAGCACTCGGGCTTGTCGGTGTTTGCTGGCGTGGG
CGAGCGTACCCGTGAGGGCAACGACTTCTACCACGAAATGAAGGACTCCAACGTGCTCGACAAGGTGGCCATGGTGTTCG
GCCAGATGAACGAGCCGCCGGGCAACCGTCTGCGCGTGGCGCTGACCGGCCTGACCATGGCCGAGCGCTTCCGTGACGAA
GGCCGCGACATCCTGTTCTTCGTCGACAACATCTACCGCTACACGCTGGCCGGTACCGAAGTGTCGGCACTGCTGGGCCG
GATGCCTTCCGCCGTGGGCTATCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAGGAGCGCATCACGTCGACCAAGA
CCGGTTCGATCACGTCGATCCAGGCCGTGTACGTGCCTGCGGATGACTTGACCGATCCGTCGCCCGCTACGACCTTCCTG
CACCTGGACTCGACCGTCGTGCTGTCGCGTGACATCGCTGCGCTGGGTATCTACCCCGCCGTCGATCCGCTCGACTCGAC
CTCGCGTCAGCTGGATCCGCAAATCGTCGGTACGGAACACTACGAAGTGGCCCGCCGCGTGCAGCAGACCCTGCAGCGCT
ACAAGGAACTGCGCGACATCATCGCGATTCTGGGCATGGACGAACTGTCGCCGGAAGACAAGCTGGCCGTGGGCCGCGCC
CGTAAGATCCAGCGTTTCCTGTCGCAGCCGTTCCACGTGGCCGAAGTGTTCACGGGTTCGCCGGGCAAGTACGTGCCGCT
GAAGGAAACCATCCGCGGCTTCAAGATGCTGGTGGATGGCGAGTGCGATCACCTGCCGGAGCAGGCGTTCTACATGGTCG
GCTCGATCGACGAGGCCTTCGAGAAGGCCAAGAAGCTCCAGTAA

Upstream 100 bases:

>100_bases
GACCCGCCAGGCAGCGATCACGAAGGAGCTGTCCGAGATCGTCGGCGGCGCAGCGGCGGTTTGACGCCCACGGCAAAGAT
TTAAGTTATTGGAGATACAG

Downstream 100 bases:

>100_bases
GAGCGAGGTCTGGCCCCGCGCGCGAGCCGGGGCCGGCACGGGCTTCCTGACATCTGCGGGAAGCCGCTTTTCTGAGCAAA
GGAATCGAGATGGCAACCAT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRTIALGSSDGLRRGMPVSNTGA
PISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Sequences:

>Translated_467_residues
MSIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRTIALGSSDGLRRGMPVSNTGA
PISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
>Mature_466_residues
SIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRTIALGSSDGLRRGMPVSNTGAP
ISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKAPKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFLH
LDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRAR
KIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=67.3728813559322, Blast_Score=630, Evalue=1e-180,
Organism=Homo sapiens, GI50345984, Length=347, Percent_Identity=25.0720461095101, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI4757810, Length=347, Percent_Identity=25.0720461095101, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI19913424, Length=317, Percent_Identity=27.4447949526814, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI19913428, Length=371, Percent_Identity=25.0673854447439, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI19913426, Length=398, Percent_Identity=24.3718592964824, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=79.1845493562232, Blast_Score=753, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=30.4918032786885, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=26.1764705882353, Blast_Score=115, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=66.1702127659574, Blast_Score=622, Evalue=1e-178,
Organism=Caenorhabditis elegans, GI71988080, Length=384, Percent_Identity=25.5208333333333, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71988063, Length=384, Percent_Identity=25.5208333333333, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17510931, Length=350, Percent_Identity=25.1428571428571, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=350, Percent_Identity=24.5714285714286, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17565854, Length=318, Percent_Identity=27.3584905660377, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=388, Percent_Identity=23.4536082474227, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=64.6420824295011, Blast_Score=601, Evalue=1e-173,
Organism=Saccharomyces cerevisiae, GI6319603, Length=376, Percent_Identity=25.531914893617, Blast_Score=109, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=438, Percent_Identity=25.1141552511416, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=25.6521739130435, Blast_Score=76, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=65.9574468085106, Blast_Score=614, Evalue=1e-176,
Organism=Drosophila melanogaster, GI28574560, Length=470, Percent_Identity=62.9787234042553, Blast_Score=587, Evalue=1e-168,
Organism=Drosophila melanogaster, GI281361666, Length=401, Percent_Identity=25.4364089775561, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24646341, Length=401, Percent_Identity=25.4364089775561, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI17136796, Length=401, Percent_Identity=25.4364089775561, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI20129479, Length=314, Percent_Identity=27.7070063694268, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=25.7062146892655, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=25.7062146892655, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=25.7062146892655, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583992, Length=325, Percent_Identity=26.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24658560, Length=420, Percent_Identity=23.3333333333333, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=47.4226804123711, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50784; Mature: 50653

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRT
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHCCCCEEE
IALGSSDGLRRGMPVSNTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKA
EEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGTEH
EEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCHHHHCCCCEECCHH
YEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRT
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHCCCCEEE
IALGSSDGLRRGMPVSNTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKA
EEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGTEH
EEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCHHHHCCCCEECCHH
YEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA