Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 17548033

GI number: 17548033

Start: 3579462

End: 3579875

Strand: Reverse

Name: atpC

Synonym: RSc3316

Alternate gene names: 17548033

Gene position: 3579875-3579462 (Counterclockwise)

Preceding gene: 17548034

Following gene: 17548031

Centisome position: 96.33

GC content: 66.67

Gene sequence:

>414_bases
ATGGCAACCATTCATGTAGACGTCGTCAGCGCCGAGCAGGAGATCTTCTCCGGCGACGCCAAGTTCGTGGCACTGCCGGG
CGAAGCGGGCGAACTGGGCATCCTGCCCGGCCACACGCCGCTGATCACGCGCATCAAGCCGGGCGCCGTGCGCATCGAGA
CCGAAGCTGGCGAAGAGTTCGTCTTTGTCGCCGGTGGCATTCTCGAAGTGCAGCCCAAGCACGTCACCGTGCTGGCTGAC
ACCGCGATCCGTGGCCACGACCTGGACGAAGCCAAGGCGAACGAAGCCAAGCGTGCGGCCGAAGAGGCGCTGCAGAACCA
GAGCAGCGACCTGGATCTGGCCCGTGCGCAAGGTGAGCTGGCCGTGGCGACTGCGCAGCTGGCAGCGATCGCGCGCCTGC
GCCGCAAGCGCTGA

Upstream 100 bases:

>100_bases
AGCTCCAGTAAGAGCGAGGTCTGGCCCCGCGCGCGAGCCGGGGCCGGCACGGGCTTCCTGACATCTGCGGGAAGCCGCTT
TTCTGAGCAAAGGAATCGAG

Downstream 100 bases:

>100_bases
GCGGATTCGCGCCGGTTCGATTTCGGATCGGTACGGCCCCAAAAGAAAGCAGCCCGATCGGGCTGCTTTTTTATTGCCTG
CTGTTGCCGCGAGCGTTCAA

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit 1; F-ATPase epsilon subunit 1

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MATIHVDVVSAEQEIFSGDAKFVALPGEAGELGILPGHTPLITRIKPGAVRIETEAGEEFVFVAGGILEVQPKHVTVLAD
TAIRGHDLDEAKANEAKRAAEEALQNQSSDLDLARAQGELAVATAQLAAIARLRRKR

Sequences:

>Translated_137_residues
MATIHVDVVSAEQEIFSGDAKFVALPGEAGELGILPGHTPLITRIKPGAVRIETEAGEEFVFVAGGILEVQPKHVTVLAD
TAIRGHDLDEAKANEAKRAAEEALQNQSSDLDLARAQGELAVATAQLAAIARLRRKR
>Mature_136_residues
ATIHVDVVSAEQEIFSGDAKFVALPGEAGELGILPGHTPLITRIKPGAVRIETEAGEEFVFVAGGILEVQPKHVTVLADT
AIRGHDLDEAKANEAKRAAEEALQNQSSDLDLARAQGELAVATAQLAAIARLRRKR

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=134, Percent_Identity=58.2089552238806, Blast_Score=153, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE1_RALSO (Q8XU77)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_521435.1
- ProteinModelPortal:   Q8XU77
- SMR:   Q8XU77
- GeneID:   1222180
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc3316
- NMPDR:   fig|267608.1.peg.3314
- HOGENOM:   HBG663981
- OMA:   MAMTVHC
- ProtClustDB:   PRK00571
- BioCyc:   RSOL267608:RSC3316-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:1.20.5.440
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF46604 ATPsynt_DE; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 14527; Mature: 14395

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIHVDVVSAEQEIFSGDAKFVALPGEAGELGILPGHTPLITRIKPGAVRIETEAGEEF
CEEEEEEEECCCHHHHCCCCEEEEECCCCCCEEEECCCCCEEEEECCCEEEEEECCCCEE
VFVAGGILEVQPKHVTVLADTAIRGHDLDEAKANEAKRAAEEALQNQSSDLDLARAQGEL
EEEECCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCE
AVATAQLAAIARLRRKR
EEHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIHVDVVSAEQEIFSGDAKFVALPGEAGELGILPGHTPLITRIKPGAVRIETEAGEEF
EEEEEEEECCCHHHHCCCCEEEEECCCCCCEEEECCCCCEEEEECCCEEEEEECCCCEE
VFVAGGILEVQPKHVTVLADTAIRGHDLDEAKANEAKRAAEEALQNQSSDLDLARAQGEL
EEEECCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCE
AVATAQLAAIARLRRKR
EEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11823852