Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is phcS [H]
Identifier: 17547455
GI number: 17547455
Start: 2944831
End: 2946159
Strand: Direct
Name: phcS [H]
Synonym: RSc2736
Alternate gene names: 17547455
Gene position: 2944831-2946159 (Clockwise)
Preceding gene: 17547454
Following gene: 17547456
Centisome position: 79.24
GC content: 64.64
Gene sequence:
>1329_bases ATGATCGCCGCCAACTACCAGGGCTATCACCAGGAGCTGTCCGATCTGCGGCTGGCCTTCAGCCGCAGCGGAGCCGTCAC GGGCGTCGTGCTGGTGATGCTCGGCGTGGGGCTCGACTACGGCCTGTATCCGCAGCATCAGGTGCTGTTCGGCGTCGCGC GGTTCCTCGTCTCGCTGATGATGCTGACCGTGATGCTCGGCCTCCCCACGCGATGGGGCCGGCCGCGCGTGCAGGCGCTG ACGCTGCTGTGGCTCGTGCTGCCGCAGCTCATGATCGTCTGGATGATCTGGTACACCGATGGCGCCGAATCGCTGTATTA CGCGGGGCTCAACCTGGCGATCTTCGCGGTCGGCATCGTCATGCCGCTGGGGTTCCTGCAGACGGTGCTGTTCGGGGCCT TCACGTACATCATCTGGGTCATCGCCTGCGTGATGCACGCCGGCGGCATCCAATCGCGCGGCACGTTCATCGTGCACTCG CTGTTCATCCTGTTTTCGGTCGTGGCCAGCGCGGTCTACACCTACTTCAACGAACTGGGCCGATTCCAGCTCTTCCAGCT GAAAGAGGAACTGGCCGAAAAGAACGAGCAGCTGGAAGCCATCAACCACAGCCTCACCGAGATCAAGGGGCAATTGCTGC AGCAGGAGAAGATGGTCGCCATCGGCACCCTGTCGGCCGGCCTGCTGCACGAGATCAACAACCCCGTCAACTTCTGCCTG ATGGCGATCGCGGTGGCGCAGGAAGACAGCACCGCCAAGGCCAGCCCGATGCTGCTCGAATGCCTGGCCGACGCCAAGGA AGGCATGCAGCGCGTCCAGCACATCGTCTCCGACCTGAAGACCTTCGCCTACCGCAGCCCCGAGAAGGGCGTGGCCGACA CGCCCTTCCTGGCGGAAAAGGCCATCGATTCGGCCATCCGCCTGACCAGCCACGAGCTGCGCGGCGTGGAAGTAAACCGC CAGTTGCCGCCCGACACGCTGGTGCGCGGCGACGAAGCCGCCATCATCGGCGTGCTGATCAACCTGCTGTCCAATGCCGC GCTGGCGATGCACAAGGCGCAGCGCGAGCACCCGTGCATCGACATCTCGGCGGAGTGGCACAACGGCCGGCTGTACGTGG TCGTCAAGGACAACGGGCCCGGCATCGCGGAGAAGAACCTGTCGCGCGTGTTCGAGCCGTTCTTCACCACGCGCGAAGTC GGCAAGGGCCTGGGACTGGGCCTGTCGATCAGCTACAGCGTGATCCAGCACCACGGCGGGACACTCTCGGTGGCCAGCCT GGAAGGCGAATGGGCACGCTTCACCTTCGATCTGCCGCGCGCGGAATAG
Upstream 100 bases:
>100_bases CCGCCGGGCTCGGAGCAGGTCCGCGTCTTCACCGACGATACCGGTGTCAACGTGTTCGCCCACGCCGACGTGGCAGCCAT CGCCTGAGAGCGCACGCACC
Downstream 100 bases:
>100_bases GAGCGAGCATGGACGCCACGCCCGACACCGGCCCGACCATCCTGTATGTGGACGACGAGCAGCAGGCCTGCAAGTGGTTC ACGCGCATGGTCTCGGCCAG
Product: transmembrane sensor histidine kinase transcription regulator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MIAANYQGYHQELSDLRLAFSRSGAVTGVVLVMLGVGLDYGLYPQHQVLFGVARFLVSLMMLTVMLGLPTRWGRPRVQAL TLLWLVLPQLMIVWMIWYTDGAESLYYAGLNLAIFAVGIVMPLGFLQTVLFGAFTYIIWVIACVMHAGGIQSRGTFIVHS LFILFSVVASAVYTYFNELGRFQLFQLKEELAEKNEQLEAINHSLTEIKGQLLQQEKMVAIGTLSAGLLHEINNPVNFCL MAIAVAQEDSTAKASPMLLECLADAKEGMQRVQHIVSDLKTFAYRSPEKGVADTPFLAEKAIDSAIRLTSHELRGVEVNR QLPPDTLVRGDEAAIIGVLINLLSNAALAMHKAQREHPCIDISAEWHNGRLYVVVKDNGPGIAEKNLSRVFEPFFTTREV GKGLGLGLSISYSVIQHHGGTLSVASLEGEWARFTFDLPRAE
Sequences:
>Translated_442_residues MIAANYQGYHQELSDLRLAFSRSGAVTGVVLVMLGVGLDYGLYPQHQVLFGVARFLVSLMMLTVMLGLPTRWGRPRVQAL TLLWLVLPQLMIVWMIWYTDGAESLYYAGLNLAIFAVGIVMPLGFLQTVLFGAFTYIIWVIACVMHAGGIQSRGTFIVHS LFILFSVVASAVYTYFNELGRFQLFQLKEELAEKNEQLEAINHSLTEIKGQLLQQEKMVAIGTLSAGLLHEINNPVNFCL MAIAVAQEDSTAKASPMLLECLADAKEGMQRVQHIVSDLKTFAYRSPEKGVADTPFLAEKAIDSAIRLTSHELRGVEVNR QLPPDTLVRGDEAAIIGVLINLLSNAALAMHKAQREHPCIDISAEWHNGRLYVVVKDNGPGIAEKNLSRVFEPFFTTREV GKGLGLGLSISYSVIQHHGGTLSVASLEGEWARFTFDLPRAE >Mature_442_residues MIAANYQGYHQELSDLRLAFSRSGAVTGVVLVMLGVGLDYGLYPQHQVLFGVARFLVSLMMLTVMLGLPTRWGRPRVQAL TLLWLVLPQLMIVWMIWYTDGAESLYYAGLNLAIFAVGIVMPLGFLQTVLFGAFTYIIWVIACVMHAGGIQSRGTFIVHS LFILFSVVASAVYTYFNELGRFQLFQLKEELAEKNEQLEAINHSLTEIKGQLLQQEKMVAIGTLSAGLLHEINNPVNFCL MAIAVAQEDSTAKASPMLLECLADAKEGMQRVQHIVSDLKTFAYRSPEKGVADTPFLAEKAIDSAIRLTSHELRGVEVNR QLPPDTLVRGDEAAIIGVLINLLSNAALAMHKAQREHPCIDISAEWHNGRLYVVVKDNGPGIAEKNLSRVFEPFFTTREV GKGLGLGLSISYSVIQHHGGTLSVASLEGEWARFTFDLPRAE
Specific function: Member of the two-component regulatory system zraS/zraR. May function as a membrane-associated protein kinase that phosphorylates zraR in response to high concentrations of zinc or lead in the medium [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=299, Percent_Identity=28.4280936454849, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1788549, Length=245, Percent_Identity=26.530612244898, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1787894, Length=226, Percent_Identity=27.4336283185841, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786783, Length=249, Percent_Identity=27.3092369477912, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081816, Length=260, Percent_Identity=25.3846153846154, Blast_Score=62, Evalue=8e-11, Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=26.2222222222222, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 48806; Mature: 48806
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAANYQGYHQELSDLRLAFSRSGAVTGVVLVMLGVGLDYGLYPQHQVLFGVARFLVSLM CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH MLTVMLGLPTRWGRPRVQALTLLWLVLPQLMIVWMIWYTDGAESLYYAGLNLAIFAVGIV HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH MPLGFLQTVLFGAFTYIIWVIACVMHAGGIQSRGTFIVHSLFILFSVVASAVYTYFNELG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC RFQLFQLKEELAEKNEQLEAINHSLTEIKGQLLQQEKMVAIGTLSAGLLHEINNPVNFCL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH MAIAVAQEDSTAKASPMLLECLADAKEGMQRVQHIVSDLKTFAYRSPEKGVADTPFLAEK HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH AIDSAIRLTSHELRGVEVNRQLPPDTLVRGDEAAIIGVLINLLSNAALAMHKAQREHPCI HHHHHHHHHHHHHCCEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE DISAEWHNGRLYVVVKDNGPGIAEKNLSRVFEPFFTTREVGKGLGLGLSISYSVIQHHGG EEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC TLSVASLEGEWARFTFDLPRAE EEEEEECCCCEEEEEECCCCCC >Mature Secondary Structure MIAANYQGYHQELSDLRLAFSRSGAVTGVVLVMLGVGLDYGLYPQHQVLFGVARFLVSLM CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH MLTVMLGLPTRWGRPRVQALTLLWLVLPQLMIVWMIWYTDGAESLYYAGLNLAIFAVGIV HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH MPLGFLQTVLFGAFTYIIWVIACVMHAGGIQSRGTFIVHSLFILFSVVASAVYTYFNELG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC RFQLFQLKEELAEKNEQLEAINHSLTEIKGQLLQQEKMVAIGTLSAGLLHEINNPVNFCL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH MAIAVAQEDSTAKASPMLLECLADAKEGMQRVQHIVSDLKTFAYRSPEKGVADTPFLAEK HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH AIDSAIRLTSHELRGVEVNRQLPPDTLVRGDEAAIIGVLINLLSNAALAMHKAQREHPCI HHHHHHHHHHHHHCCEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE DISAEWHNGRLYVVVKDNGPGIAEKNLSRVFEPFFTTREVGKGLGLGLSISYSVIQHHGG EEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC TLSVASLEGEWARFTFDLPRAE EEEEEECCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]