Click here to switch to the map view.

The map label for this gene is pehB [H]

Identifier: 17546475

GI number: 17546475

Start: 1878639

End: 1880747

Strand: Direct

Name: pehB [H]

Synonym: RSc1756

Alternate gene names: 17546475

Gene position: 1878639-1880747 (Clockwise)

Preceding gene: 17546473

Following gene: 17546478

Centisome position: 50.55

GC content: 64.34

Gene sequence:

>2109_bases
ATGCGACAAAGAAAAATGGGGCGTGGTGCCGCCCTGCTGCTGGCGGCGATGCTGGCCGGTGCGTTGGTAGCCTGCGGCTC
GGGCGAGGGCGATGGCGCTTCCGGCTTGTCCGTTTCAGGCGGCACCGCGCAGACGACCACGCAGACGGTCGGCTCGACCT
GCTCCCCGGTCAATGTGCGGGCGACCAGCGGCACCCGCTCGACCGTGCCGCAGCATCCGTGCGTTCCGGCGCTCGCCTAT
GACGACACCAGCATCACGCTGGCCTGGAACAAGCCGGACATCTATGCCGATGTGGCCGATTACAACGTTTACATGAACGG
GACGAAACTCGGCAGCGCATCGGAAAACAATGCGGTGCATTCCGTCGCGAAACGCTATATCGATCGCTTTTATGCGGAGG
ACACGGCGGGTTTTCACACCAGAATGACCTTTCACAGCTTTCGCGTGACGGGGCTGGCTCCGGATACGGCTTATACCTTC
ACCATCCGGTCGGTGGATCGTTCCGGAAAGGAATCCGCCGACAGCGTGCCCGTCGTGCACAGGACAGCCGCCGCTTTCAC
GCGCGTCTATGACGTGGCGAAACTGGGCGCCAGGGGCGATGGCGCGACGCTGAATACGGCCGTCATCCAGAAGGCGATCG
ACGACTGCGCCGGCACGTCCACCACGGCGTACGGGTGCAAGGTGCTGATTCCCGCCGACGATGCGGGCGGCGCCGTGTTT
GTGAGCGGCGCCCTGTTCCTCAGAAGCAACATGACACTGGAGGTTGCCGAAGGCGCGACGTTGCGCGGGTCCGCCGACGC
GGCGGATTACCCGCTCGCCAAGGGGTACCAGCTGTACAGCTATTTCACCAACGTGACGGACGATCGCCGTCCGCCGTCGT
TGCTGAATACGCTCAGTCCCGCGCACATGAACGGCGCGACGGCATTGGCCGACCACCAGGGCTACGACGACAGGCGCGGG
GTGTTCAGCAACATCCGGGTCACCGGCAAGGGCACGCTGGACGGCAGCGGATGGGTGCGCCGCGGCACCGACACGATCGA
TGAGGTCGGCAACCGTCTCGCCAGCTTCGCGCCCGGCAATGCCAGCAAGTGGAGCACCCTCGGCGTGCTGGCCAAGCGCC
AGATGCTCGCGGCCCAGGCCGAAGCCGGCGGCACGCTCGACTCGACCCAGAACGCGAACTACTACAGCAACCGCCGATCG
AGCCTTGCCACCTTTCGCGGCACGCGCAACCTCTATTTCGGCGATCTGACGCTGACCAACCCGGCGCTCCATGGCGTCAT
GTTCATCGAGAGCGACAACATGGTGTTCGCCAACACGGTCACGCAGACGTTCGATATCAACAACGCGGACGGCGTGGAAT
TCGGCAACAGCAGCAACGCCGTCGTGTTCAACAATTTCATCGACAGCGGCGACGACAACATCAACTTTGCCGCCGGCCAG
GGCAAGAACTATGAGGGGGGCACGCCCCAGCAGTACGCATGGATCTTCAACAACTACATGCGCGAGGGCCACGGGGGTGT
GGTGGCCGGCAGCCATACCGGCGCGTGGATCCAGGACATCCTCGCCGAGGACAACGTGATGTTCATGACCGACAACGGGC
TGCGCCTCAAGAGCACGCCGGCCACGGGCGGCGGCGCGCGGCGCATCGTATTCCGCGACACCGCCATGCGGGAGGTCGGC
ACCAAGAACAGCGTGTCGGCAGGGGGGCAGACCTTCGCCAACAACACCAATGGCAGCCCGTTCATTCTCACGTTGTCGTA
TAGCGCCGGCAGCAACGTGTTCGACAACGCAGCCGCCGCGGCCCAATTCCGCGATATCACCGTCAATCGCGTGACGATCG
ACAACGGCAATCCGGGCACCGGCGGGGCGATGATCTCGGTGGACGGCTATGACGGCACCGATCCGTCGCTGGGCTATCCC
GAAACGTTCCACGAGAACGTGCTGTTCGACACGGTGAGCATCACCCGCGCGAAGCCCGCCAGCATCAGCCGCCTCAAGGA
CAGTACCTTCAAGGACGTGACGATCACGAACTGGGGCACAGCGGCGACGCCCTGGTCGATTCGCGACGCTTCCGGGCTGA
CCTTCAGCAACGTGAAGCCGGCGCCCTAG

Upstream 100 bases:

>100_bases
GCGAATGCAATGGCTGCGGTCAATGCGGGTGGCAAGACATCCGGATGATCCCGCATCGCCCATTGCGGCCGCATCCTGTT
TTGAAAAGTGGAGAAGTGCA

Downstream 100 bases:

>100_bases
TCGCGCCGCCGACGGCCGGCCTTGAGCCCCGGTGCCGGCCTGGCGCCGCCCGCTCCGATTGGCGCGCGGTGCCGGCCAGG
GCCCGGCGTCAATGACGGCA

Product: exo-poly-galacturonase signal peptide protein

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 702; Mature: 702

Protein sequence:

>702_residues
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY
DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF
TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG
VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS
SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG
TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP
ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP

Sequences:

>Translated_702_residues
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY
DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF
TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG
VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS
SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG
TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP
ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP
>Mature_702_residues
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY
DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF
TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG
VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS
SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG
TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP
ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 74270; Mature: 74270

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVR
CCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEE
ATSGTRSTVPQHPCVPALAYDDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVH
ECCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCCCCHHHH
SVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTFTIRSVDRSGKESADSVPVVH
HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH
RTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEE
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSP
EEEEEEEECCCEEEECCCCEECCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHCCCC
AHMNGATALADHQGYDDRRGVFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGN
CCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCCCCC
ASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRSSLATFRGTRNLYFGDLTLTN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHEECCCCCEEEEEEEECC
PALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
CCCEEEEEEECCCEEEEEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCCCEEEEECC
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTP
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEECCCEEEECCC
ATGGGARRIVFRDTAMREVGTKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAA
CCCCCEEEEEEECHHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHCCHHHH
AQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYPETFHENVLFDTVSITRAKPA
HHEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEEEEEECCCCCC
SISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVR
CCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEE
ATSGTRSTVPQHPCVPALAYDDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVH
ECCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCCCCHHHH
SVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTFTIRSVDRSGKESADSVPVVH
HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH
RTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEE
VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSP
EEEEEEEECCCEEEECCCCEECCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHCCCC
AHMNGATALADHQGYDDRRGVFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGN
CCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCCCCC
ASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRSSLATFRGTRNLYFGDLTLTN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHEECCCCCEEEEEEEECC
PALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ
CCCEEEEEEECCCEEEEEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCCCEEEEECC
GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTP
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEECCCEEEECCC
ATGGGARRIVFRDTAMREVGTKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAA
CCCCCEEEEEEECHHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHCCHHHH
AQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYPETFHENVLFDTVSITRAKPA
HHEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEEEEEECCCCCC
SISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]