| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is livJ [C]
Identifier: 17546469
GI number: 17546469
Start: 1872682
End: 1873935
Strand: Direct
Name: livJ [C]
Synonym: RSc1750
Alternate gene names: 17546469
Gene position: 1872682-1873935 (Clockwise)
Preceding gene: 17546468
Following gene: 17546470
Centisome position: 50.39
GC content: 65.15
Gene sequence:
>1254_bases ATGACGAAGTTCCGTCCGTTGATCGTGGCCGTTGCAAGTGTCGCGGCAATCGGTGGAGGGCTGGCAAGCGCCGCCGCATC CGCCGCCGAGACCGTCAAGATCGCCTGGATCGATCCGCTCTCCGGCCTGATGGGCGCGCTGGGCCAGAATCAGCTGCGCA GCTGGCAGTACATCGCCGAGCTGGCCACGCAGAAGAACTGGGCCGGCGACGGCACCCGGTTCGAGGTGGTGGGCTTCGAC AACAAGCTCTCGCCGCAGGAGAGCCTGACGGTGCTCAAGCAGGTGGCCGACCAGGGCATCCACTACATCGCGCAGGGCAA CGGCTCCAGCGTGGGCATGGCGCTGGAGGACGCGGTCGCCAAGTACAACGAGCGCAACCCGGGCAAGGAGATCGTCTACC TGAACTACGCGGCGGTCGACCCGGACATGACCAACGGCAAGTGCAACTACTGGCACTTCCGCCTGGACGCGAACTCCGAC ATGAAGATGGAGGCCCTGACCAGCTACCTGGCCAAGGACCCGGGCGTCAAGAAGGTCTACCTGATCAACCAGAACTACTC GTTCGGCCACCAGGTGGCGCGCGCGGCCAAGGCGTATCTCAAGCGCAAGCGCCCCGACATCGAGATCGTCGGCGAAGACC TGCATCCGCTGGCGCAGGTGAAGGATTTCTCGCCGTACGTGTCGAAGATCAAAGCGTCGGGCGCCGATACCGTCATCACC GGCAACTGGGGCAGCGACCTGGCGCTGCTGATCAAGGCCGGCAAGGATGCGGGCCTGAACGCCAATTTCTACACCTACTA CGCCTCGAGCACCGGCGTGCCGACCGCCATGGGCCCCGCCGGCGCCGACCACGTCAAGTACGTCGGCTACTGGAACGTCA ACAACGACGGCTTCAAGGGCGCCGACATCGTCGAGGGCTACAAGAAGAAGTACAACGACGACTACTACCTGATGGCGTCG TACACCGGCATCGCGCTGCTGGCCAAGGCCGTCAAGCAGGCCCGGTCCGCCGAGCCGGGCAAGGTCGCCCGGGCCCTGGA GGGGATGAAGGTCGACAGCCTGAACGGCCCGTTCGAGATGCGCGCCTCCGACCACCAGGGCCAGCAGCCGCTCTACATCG CCACCTGGAAGAAGACCGACGGCAAGACCGTGCGCTTCGACCAGGAGAACACCGGCTACGGCTGGAGGACCGATGCGGTG CTCGACCAGTACATCGCGTCGCAGCCGACCTCCTGCCAGATGAAGCGCCCCTGA
Upstream 100 bases:
>100_bases GGCGCGTTGCAACCTGGAGACGTCAAGAGCCGGCGTGCCCGCAGCGGTGGCGCGCCGGAGAGTGACTCGTCGGCGACTCC ACCACCTGAAGGAGACACGC
Downstream 100 bases:
>100_bases CCTGAAATCAGACGGCGGGTGGTGTGCCGAACGGCCGCCCGATGCTATCGTGCGGCGATGTTTGAAACGGGCGGGGGCAT GGGCCGGCACCGTTGGCCTA
Product: Leu/Ile/Val-binding precursor signal peptide protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MTKFRPLIVAVASVAAIGGGLASAAASAAETVKIAWIDPLSGLMGALGQNQLRSWQYIAELATQKNWAGDGTRFEVVGFD NKLSPQESLTVLKQVADQGIHYIAQGNGSSVGMALEDAVAKYNERNPGKEIVYLNYAAVDPDMTNGKCNYWHFRLDANSD MKMEALTSYLAKDPGVKKVYLINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVIT GNWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVKYVGYWNVNNDGFKGADIVEGYKKKYNDDYYLMAS YTGIALLAKAVKQARSAEPGKVARALEGMKVDSLNGPFEMRASDHQGQQPLYIATWKKTDGKTVRFDQENTGYGWRTDAV LDQYIASQPTSCQMKRP
Sequences:
>Translated_417_residues MTKFRPLIVAVASVAAIGGGLASAAASAAETVKIAWIDPLSGLMGALGQNQLRSWQYIAELATQKNWAGDGTRFEVVGFD NKLSPQESLTVLKQVADQGIHYIAQGNGSSVGMALEDAVAKYNERNPGKEIVYLNYAAVDPDMTNGKCNYWHFRLDANSD MKMEALTSYLAKDPGVKKVYLINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVIT GNWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVKYVGYWNVNNDGFKGADIVEGYKKKYNDDYYLMAS YTGIALLAKAVKQARSAEPGKVARALEGMKVDSLNGPFEMRASDHQGQQPLYIATWKKTDGKTVRFDQENTGYGWRTDAV LDQYIASQPTSCQMKRP >Mature_416_residues TKFRPLIVAVASVAAIGGGLASAAASAAETVKIAWIDPLSGLMGALGQNQLRSWQYIAELATQKNWAGDGTRFEVVGFDN KLSPQESLTVLKQVADQGIHYIAQGNGSSVGMALEDAVAKYNERNPGKEIVYLNYAAVDPDMTNGKCNYWHFRLDANSDM KMEALTSYLAKDPGVKKVYLINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVITG NWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVKYVGYWNVNNDGFKGADIVEGYKKKYNDDYYLMASY TGIALLAKAVKQARSAEPGKVARALEGMKVDSLNGPFEMRASDHQGQQPLYIATWKKTDGKTVRFDQENTGYGWRTDAVL DQYIASQPTSCQMKRP
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI48994941, Length=353, Percent_Identity=20.9631728045326, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000709 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45466; Mature: 45335
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS00995 TCP1_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKFRPLIVAVASVAAIGGGLASAAASAAETVKIAWIDPLSGLMGALGQNQLRSWQYIAE CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCHHHHHHHCCHHHHHHHHHHHH LATQKNWAGDGTRFEVVGFDNKLSPQESLTVLKQVADQGIHYIAQGNGSSVGMALEDAVA HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH KYNERNPGKEIVYLNYAAVDPDMTNGKCNYWHFRLDANSDMKMEALTSYLAKDPGVKKVY HHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEE LINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVIT EEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCHHHHHHHCCCCCEEEE GNWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVKYVGYWNVNNDGFKG CCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC ADIVEGYKKKYNDDYYLMASYTGIALLAKAVKQARSAEPGKVARALEGMKVDSLNGPFEM HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCEEE RASDHQGQQPLYIATWKKTDGKTVRFDQENTGYGWRTDAVLDQYIASQPTSCQMKRP CCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCEEHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TKFRPLIVAVASVAAIGGGLASAAASAAETVKIAWIDPLSGLMGALGQNQLRSWQYIAE CCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCHHHHHHHCCHHHHHHHHHHHH LATQKNWAGDGTRFEVVGFDNKLSPQESLTVLKQVADQGIHYIAQGNGSSVGMALEDAVA HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH KYNERNPGKEIVYLNYAAVDPDMTNGKCNYWHFRLDANSDMKMEALTSYLAKDPGVKKVY HHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEE LINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVIT EEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCHHHHHHHCCCCCEEEE GNWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVKYVGYWNVNNDGFKG CCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC ADIVEGYKKKYNDDYYLMASYTGIALLAKAVKQARSAEPGKVARALEGMKVDSLNGPFEM HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCEEE RASDHQGQQPLYIATWKKTDGKTVRFDQENTGYGWRTDAVLDQYIASQPTSCQMKRP CCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCEEHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA