Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is phbC [H]
Identifier: 17546350
GI number: 17546350
Start: 1751336
End: 1753132
Strand: Direct
Name: phbC [H]
Synonym: RSc1631
Alternate gene names: 17546350
Gene position: 1751336-1753132 (Clockwise)
Preceding gene: 17546348
Following gene: 17546351
Centisome position: 47.12
GC content: 67.28
Gene sequence:
>1797_bases ATGGCATCGCGTCACAAGGCATCTTCCCATGCAACCGGATCCCAGGCCCAGCCAGCGTGGCATGGCTTGGCCGATCCTGC CCAGTGGGCGGAGCAGTTCAGGCAGTGGCAGTCCATGGCGGGGGCGTTCGCGCAGTCCGGCGCACCGGGCTCCACCGGGT TCGGACCGGCTGGCGGCATGCCGACGGGCGAGGGCGCGATGCCGTTTGCGCTGATCCCGCCCGAGCGGCTGGCCGAGATC CAGCAGAAGTACCTCGAAGCGTGGCTCCAGATCTGGGGGCACATGAGCGCCGGCGACAGCGCCGAGACCGTGGCTCCCTC CGACCGCCGCTTTGCCAACGACGCTTGGCGCAAGAGTCCGCTGTATGGCTATGCCGCGGCCTTCTATGTCCTCAATGCGC GCACGCTGATGGACATGGCCGATGCCGTGCAGGCCGATGCCAAGACGCGCGAGCGCGTGCGCTTTGCCGTGTCGCAATGG ACCGCCGCCATGTCGCCGTCCAACTTCCTGGCGACCAACCCCGAGGCGCAGAAGCAACTGATCGAGTCGCGCGGCGAGTC GCTGCGCGCCGGCATCCTCAACATGCTGCAGGACATGGAACGCGGCAAGATCTCGCAGACGGACGAGACCGCGTTCGAGA TCGGCCGCAACGTCGCCAACAGCGAAGGTGCGGTGGTCTTCGAGAACGACTACTTCCAGCTGATCCAGTACAAGCCGCTG ACGGCCAAGGTGCATGCCCGCCCGCTGCTGCTGGTGCCGCCCTGTATCAACAAGTACTACATCCTGGATCTGCAGCCGGC CAACTCGCTGGTGCGCTACTCGGTGGAGCAGGGGCATACGGTGTTCCTGGTGTCGTGGCGCAACCCGGATGCCAGCATGG CCGCGCGCAACTGGGATGACTACATCGAGGGCGGCGCGATCGAGGCCATCCGGGTGGCCCGCGAGATTGCCGCGCAGGAC CGGATCAACGTGCTCGGCTTCTGCGTGGGCGGCACGATCCTCTCCACGGCGTTGGCGGTGCTGGCCGCGCGCGGCCAGCA TCCGGCGGCCAGCCTGACCCTGCTGACCACGCTGCTGGATTTCAGCGACACCGGCATCCTCGACGTGTTCGTGGACCAGG CCCAGGTGGAGATGCGCGAGCAGACCATCGGCAGCGCGGCCCCGGCCGGCCCCGGCCTGCTGCGCGGCGTGGAGCTGGCG AACACGTTCTCCTTCCTGCGTCCGAACGACCTGGTGTGGAACTACGTGGTCGAGAACTACCTGAAGGGCAAGACGCCCGC GCCGTTCGACCTGCTGTACTGGAACGGCGATTCCACCAATCTGCCCGGCCCGTGGTACTGCTGGTACCTGCGCCACACGT ACCTGCAGAACGACCTGATGGCGCCGGGCAGGCTGACGGTCTGCGGCGAGCCGGTCGATCTCGGCCGGATCGAGGTGCCC GTCTATCTCTACGGTTCGCGCGAAGATCACATCGTCCCCTGGAAATCCGCCTATGCTTCGACGCAGCTGCTTAAGGGCGA GCGGCGTTTTGTGCTGGGCGCCTCGGGGCACATCGCGGGCGTCATCAACCCGCCGGCGGCCAATAAGCGCGCGCACTGGA TCAACGCCGGGCTACCGGATTCGGCCCAGGCCTGGCTGGACGGCGCGAAGGAGCATCCGGGCAGCTGGTGGCCGGACTGG TCCGCGTGGCTGGCCAAGCACGCCGGGGCGCAGAAGGCCGCTCCCAAGCACTACGGCAATGCGGACCATCCGGTGATCGA GCCGGCACCGGGCCGCTACGTCAAACAGAAAGCGTAA
Upstream 100 bases:
>100_bases ATTGACAGCCGTGAAATCGCGAGGCAACAATGCCCCGCAATACTGCGACGGACGCCCTATATTCAGCCGGGTCGGCATCG TCGCCCGCATCGAGGACACT
Downstream 100 bases:
>100_bases TAGCGCGCGCGCCACGCCGTGGCGGATTGTGCGCGGACAGCGCTTCCCCCAACCTTTTTGAGATCGTGGAAGGAAAGCAA ATGACCGATGTAGTGATCGT
Product: poly-beta-hydroxybutyrate polymerase transmembrane protein
Products: NA
Alternate protein names: PHA synthase; PHB synthase; Poly(3-hydroxyalkanoate) polymerase; PHA polymerase; Poly(3-hydroxybutyrate) polymerase; PHB polymerase; Polyhydroxyalkanoic acid synthase [H]
Number of amino acids: Translated: 598; Mature: 597
Protein sequence:
>598_residues MASRHKASSHATGSQAQPAWHGLADPAQWAEQFRQWQSMAGAFAQSGAPGSTGFGPAGGMPTGEGAMPFALIPPERLAEI QQKYLEAWLQIWGHMSAGDSAETVAPSDRRFANDAWRKSPLYGYAAAFYVLNARTLMDMADAVQADAKTRERVRFAVSQW TAAMSPSNFLATNPEAQKQLIESRGESLRAGILNMLQDMERGKISQTDETAFEIGRNVANSEGAVVFENDYFQLIQYKPL TAKVHARPLLLVPPCINKYYILDLQPANSLVRYSVEQGHTVFLVSWRNPDASMAARNWDDYIEGGAIEAIRVAREIAAQD RINVLGFCVGGTILSTALAVLAARGQHPAASLTLLTTLLDFSDTGILDVFVDQAQVEMREQTIGSAAPAGPGLLRGVELA NTFSFLRPNDLVWNYVVENYLKGKTPAPFDLLYWNGDSTNLPGPWYCWYLRHTYLQNDLMAPGRLTVCGEPVDLGRIEVP VYLYGSREDHIVPWKSAYASTQLLKGERRFVLGASGHIAGVINPPAANKRAHWINAGLPDSAQAWLDGAKEHPGSWWPDW SAWLAKHAGAQKAAPKHYGNADHPVIEPAPGRYVKQKA
Sequences:
>Translated_598_residues MASRHKASSHATGSQAQPAWHGLADPAQWAEQFRQWQSMAGAFAQSGAPGSTGFGPAGGMPTGEGAMPFALIPPERLAEI QQKYLEAWLQIWGHMSAGDSAETVAPSDRRFANDAWRKSPLYGYAAAFYVLNARTLMDMADAVQADAKTRERVRFAVSQW TAAMSPSNFLATNPEAQKQLIESRGESLRAGILNMLQDMERGKISQTDETAFEIGRNVANSEGAVVFENDYFQLIQYKPL TAKVHARPLLLVPPCINKYYILDLQPANSLVRYSVEQGHTVFLVSWRNPDASMAARNWDDYIEGGAIEAIRVAREIAAQD RINVLGFCVGGTILSTALAVLAARGQHPAASLTLLTTLLDFSDTGILDVFVDQAQVEMREQTIGSAAPAGPGLLRGVELA NTFSFLRPNDLVWNYVVENYLKGKTPAPFDLLYWNGDSTNLPGPWYCWYLRHTYLQNDLMAPGRLTVCGEPVDLGRIEVP VYLYGSREDHIVPWKSAYASTQLLKGERRFVLGASGHIAGVINPPAANKRAHWINAGLPDSAQAWLDGAKEHPGSWWPDW SAWLAKHAGAQKAAPKHYGNADHPVIEPAPGRYVKQKA >Mature_597_residues ASRHKASSHATGSQAQPAWHGLADPAQWAEQFRQWQSMAGAFAQSGAPGSTGFGPAGGMPTGEGAMPFALIPPERLAEIQ QKYLEAWLQIWGHMSAGDSAETVAPSDRRFANDAWRKSPLYGYAAAFYVLNARTLMDMADAVQADAKTRERVRFAVSQWT AAMSPSNFLATNPEAQKQLIESRGESLRAGILNMLQDMERGKISQTDETAFEIGRNVANSEGAVVFENDYFQLIQYKPLT AKVHARPLLLVPPCINKYYILDLQPANSLVRYSVEQGHTVFLVSWRNPDASMAARNWDDYIEGGAIEAIRVAREIAAQDR INVLGFCVGGTILSTALAVLAARGQHPAASLTLLTTLLDFSDTGILDVFVDQAQVEMREQTIGSAAPAGPGLLRGVELAN TFSFLRPNDLVWNYVVENYLKGKTPAPFDLLYWNGDSTNLPGPWYCWYLRHTYLQNDLMAPGRLTVCGEPVDLGRIEVPV YLYGSREDHIVPWKSAYASTQLLKGERRFVLGASGHIAGVINPPAANKRAHWINAGLPDSAQAWLDGAKEHPGSWWPDWS AWLAKHAGAQKAAPKHYGNADHPVIEPAPGRYVKQKA
Specific function: Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation [H]
COG id: COG3243
COG function: function code I; Poly(3-hydroxyalkanoate) synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PHA/PHB synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR010963 - InterPro: IPR010941 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF07167 PhaC_N [H]
EC number: NA
Molecular weight: Translated: 65608; Mature: 65476
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRHKASSHATGSQAQPAWHGLADPAQWAEQFRQWQSMAGAFAQSGAPGSTGFGPAGGM CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PTGEGAMPFALIPPERLAEIQQKYLEAWLQIWGHMSAGDSAETVAPSDRRFANDAWRKSP CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC LYGYAAAFYVLNARTLMDMADAVQADAKTRERVRFAVSQWTAAMSPSNFLATNPEAQKQL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHH IESRGESLRAGILNMLQDMERGKISQTDETAFEIGRNVANSEGAVVFENDYFQLIQYKPL HHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCC TAKVHARPLLLVPPCINKYYILDLQPANSLVRYSVEQGHTVFLVSWRNPDASMAARNWDD EEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHCCCCEEEEEEECCCCHHHHHCCCHH YIEGGAIEAIRVAREIAAQDRINVLGFCVGGTILSTALAVLAARGQHPAASLTLLTTLLD HHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FSDTGILDVFVDQAQVEMREQTIGSAAPAGPGLLRGVELANTFSFLRPNDLVWNYVVENY CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKGKTPAPFDLLYWNGDSTNLPGPWYCWYLRHTYLQNDLMAPGRLTVCGEPVDLGRIEVP HCCCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEE VYLYGSREDHIVPWKSAYASTQLLKGERRFVLGASGHIAGVINPPAANKRAHWINAGLPD EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCEEEECCCCC SAQAWLDGAKEHPGSWWPDWSAWLAKHAGAQKAAPKHYGNADHPVIEPAPGRYVKQKA HHHHHHCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC >Mature Secondary Structure ASRHKASSHATGSQAQPAWHGLADPAQWAEQFRQWQSMAGAFAQSGAPGSTGFGPAGGM CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PTGEGAMPFALIPPERLAEIQQKYLEAWLQIWGHMSAGDSAETVAPSDRRFANDAWRKSP CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC LYGYAAAFYVLNARTLMDMADAVQADAKTRERVRFAVSQWTAAMSPSNFLATNPEAQKQL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHH IESRGESLRAGILNMLQDMERGKISQTDETAFEIGRNVANSEGAVVFENDYFQLIQYKPL HHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCC TAKVHARPLLLVPPCINKYYILDLQPANSLVRYSVEQGHTVFLVSWRNPDASMAARNWDD EEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHCCCCEEEEEEECCCCHHHHHCCCHH YIEGGAIEAIRVAREIAAQDRINVLGFCVGGTILSTALAVLAARGQHPAASLTLLTTLLD HHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FSDTGILDVFVDQAQVEMREQTIGSAAPAGPGLLRGVELANTFSFLRPNDLVWNYVVENY CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKGKTPAPFDLLYWNGDSTNLPGPWYCWYLRHTYLQNDLMAPGRLTVCGEPVDLGRIEVP HCCCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEE VYLYGSREDHIVPWKSAYASTQLLKGERRFVLGASGHIAGVINPPAANKRAHWINAGLPD EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCEEEECCCCC SAQAWLDGAKEHPGSWWPDWSAWLAKHAGAQKAAPKHYGNADHPVIEPAPGRYVKQKA HHHHHHCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2670936; 1987116 [H]