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The map label for this gene is lpsJ [H]

Identifier: 17546290

GI number: 17546290

Start: 1686956

End: 1687594

Strand: Direct

Name: lpsJ [H]

Synonym: RSc1571

Alternate gene names: 17546290

Gene position: 1686956-1687594 (Clockwise)

Preceding gene: 17546289

Following gene: 17546291

Centisome position: 45.39

GC content: 65.73

Gene sequence:

>639_bases
ATGGCATGGACGCGTGATGAAATGGCTGCGCGCGCAGCCAGGGAGCTGCAGGACGGCTTCTATGTGAACCTGGGCATCGG
CCTGCCGACGCTGGTCGCCAACCACGTGCCGGACGGCATGGAGGTGTGGCTGCAGTCGGAGAACGGCCTGCTCGGCATCG
GCCCGTTCCCGACCGACGACGAGGTCGATCCCGACATGATCAACGCCGGCAAGCAGACCGTGACGACGCTGCCGGGCTCG
TCGATCTTCTCCTCGGCGGATTCGTTCGCCATGATCCGCGGCGGGCATATCAACCTGGCCATCCTGGGCGCGATGCAGAT
CAGCGAGACGGGCGACCTGGCCAACTGGATGATCCCGGGCAAGATGGTCAAGGGCATGGGCGGCGCGATGGACCTGGTCG
CGGGCGTCAAGCGCGTGATCGTGCTGATGGAGCACACCGCCAAGAAGAAGGACGGCTCCGAAGACCTGAAGATCCTGCCC
AAGTGCACGCTGCCGCTGACGGGCGTGGGCGTGGTCGACCGCATCATCACCGACCTGGGCGTGATCGACGTGACCGAGCA
TGGCCTGAAGCTGGTGGAGGCCGCGCCGGGTGTCTCGCGCGAGGACATCCAGTCGAAGACGGGCGTCAACCTGCTGTAA

Upstream 100 bases:

>100_bases
GCGTGTTCGTGCAGCGCATCGTGCTGAACGCCCATCCGGAAAAACGCATCGAGCAGCGCACCGTGCGCGCCAAATAACCA
GGACGATCAGGAGACCGAAC

Downstream 100 bases:

>100_bases
ACCGGAGAACGTCATGCTGCAAGGAAAAACCGCCCTGGTGACCGGCTCCACCAGCGGCATCGGCCTGGGCATTGCCTGCG
CGCTCGCGGCGCAGGGCGCC

Product: succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAWTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDDEVDPDMINAGKQTVTTLPGS
SIFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILP
KCTLPLTGVGVVDRIITDLGVIDVTEHGLKLVEAAPGVSREDIQSKTGVNLL

Sequences:

>Translated_212_residues
MAWTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDDEVDPDMINAGKQTVTTLPGS
SIFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILP
KCTLPLTGVGVVDRIITDLGVIDVTEHGLKLVEAAPGVSREDIQSKTGVNLL
>Mature_211_residues
AWTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDDEVDPDMINAGKQTVTTLPGSS
IFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILPK
CTLPLTGVGVVDRIITDLGVIDVTEHGLKLVEAAPGVSREDIQSKTGVNLL

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=209, Percent_Identity=57.4162679425837, Blast_Score=240, Evalue=8e-64,
Organism=Homo sapiens, GI11545841, Length=207, Percent_Identity=58.9371980676328, Blast_Score=234, Evalue=3e-62,
Organism=Escherichia coli, GI1788552, Length=203, Percent_Identity=51.2315270935961, Blast_Score=204, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI17531517, Length=210, Percent_Identity=54.7619047619048, Blast_Score=227, Evalue=3e-60,
Organism=Drosophila melanogaster, GI21358325, Length=209, Percent_Identity=59.8086124401914, Blast_Score=249, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24655794, Length=209, Percent_Identity=59.8086124401914, Blast_Score=248, Evalue=2e-66,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22489; Mature: 22358

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDD
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCC
EVDPDMINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPG
CCCHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILPKCTLPLTGVGVVDRIITDLG
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCC
VIDVTEHGLKLVEAAPGVSREDIQSKTGVNLL
CEEECHHHHHHHHHCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
AWTRDEMAARAARELQDGFYVNLGIGLPTLVANHVPDGMEVWLQSENGLLGIGPFPTDD
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCC
EVDPDMINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAILGAMQISETGDLANWMIPG
CCCHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGSEDLKILPKCTLPLTGVGVVDRIITDLG
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCC
VIDVTEHGLKLVEAAPGVSREDIQSKTGVNLL
CEEECHHHHHHHHHCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]