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The map label for this gene is soxD2 [H]

Identifier: 17545821

GI number: 17545821

Start: 1158859

End: 1159155

Strand: Direct

Name: soxD2 [H]

Synonym: RSc1102

Alternate gene names: 17545821

Gene position: 1158859-1159155 (Clockwise)

Preceding gene: 17545820

Following gene: 17545822

Centisome position: 31.18

GC content: 63.97

Gene sequence:

>297_bases
ATGCTGCTGATCGAATGTCCGTGGTGCGGGCCGCGCGCCGAATCCGAGTTCACGTGCGGCGGCGAAGCCGACATCGTGCG
CCCGGTCGCCAACGAGAACATGAGCGACCGTGAATGGGGTGATTACGTGTTCATGCGCGAGAACAAGCGCGGCCTGCACC
GCGAGCAATGGCTGCACACGCAGGGTTGCCGCCGCTGGTTCAAGGTCGAGCGCGACACGCTCACCTACGAGATCAAGGGC
TACGAAACGTTTGGCGGCATCGCCGCCCGTGCAAACGAAGGGGGCGCCAGCAAATGA

Upstream 100 bases:

>100_bases
GCCGTTCGCGCTTGAGCGCTTCTATACGGGGCACCTGATCGACGAGCACGGCGCCGCCGCCGTCGCGCACTGAACCCGAC
CACCACCAGGAGAAGGAAAC

Downstream 100 bases:

>100_bases
GCCAGAAAGACCGTCTCGGTACGGGTGGCCGTATCAATCGTGCGATTCCGCTGACGTTTACGTTCAACGGCCGCACGTAT
CAGGGTTTCCAGGGCGACAC

Product: sarcosine oxidase subunit delta

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MLLIECPWCGPRAESEFTCGGEADIVRPVANENMSDREWGDYVFMRENKRGLHREQWLHTQGCRRWFKVERDTLTYEIKG
YETFGGIAARANEGGASK

Sequences:

>Translated_98_residues
MLLIECPWCGPRAESEFTCGGEADIVRPVANENMSDREWGDYVFMRENKRGLHREQWLHTQGCRRWFKVERDTLTYEIKG
YETFGGIAARANEGGASK
>Mature_98_residues
MLLIECPWCGPRAESEFTCGGEADIVRPVANENMSDREWGDYVFMRENKRGLHREQWLHTQGCRRWFKVERDTLTYEIKG
YETFGGIAARANEGGASK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11317; Mature: 11317

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIECPWCGPRAESEFTCGGEADIVRPVANENMSDREWGDYVFMRENKRGLHREQWLHT
CEEEECCCCCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
QGCRRWFKVERDTLTYEIKGYETFGGIAARANEGGASK
HHHHHHHCCCCCEEEEEECCEECCCCEEEECCCCCCCC
>Mature Secondary Structure
MLLIECPWCGPRAESEFTCGGEADIVRPVANENMSDREWGDYVFMRENKRGLHREQWLHT
CEEEECCCCCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
QGCRRWFKVERDTLTYEIKGYETFGGIAARANEGGASK
HHHHHHHCCCCCEEEEEECCEECCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]