Definition Ralstonia solanacearum GMI1000, complete genome.
Accession NC_003295
Length 3,716,413

Click here to switch to the map view.

The map label for this gene is yijE [C]

Identifier: 17545721

GI number: 17545721

Start: 1051553

End: 1052491

Strand: Direct

Name: yijE [C]

Synonym: RSc1002

Alternate gene names: 17545721

Gene position: 1051553-1052491 (Clockwise)

Preceding gene: 17545719

Following gene: 17545723

Centisome position: 28.29

GC content: 73.59

Gene sequence:

>939_bases
ATGAGACCGTCCACCGCCGCCGCCAGCCTGTCCGCTCGCGCCGCCGACAAGCTGCTCGGCGTGCTGCTGATCGCCGTTTC
CGCGGCTTCGTTCGGCGCGATGGCGATCTTTACCCACTATGCCTATGCCTCCGGCGCCGACACGGTCGGCCTGCTGGCGG
TGCGCTTCAGCCTGGCGGCACTCGCGCTGACGGCGGTGATGCGCGTGCGGCGCATCGGCCTCCCGCCGTGGCCGCGGGTG
GCGGGGCTGGCGGCGATGGGCGGCATCGGCTACGCCGGTCAGTCGTTTGCGTTCTTCACCGCGCTGCACTACGCGCCGGC
CAGCCTGGTGGCGCTGCTGCTGTACCTGTATCCGATGTTCGTGACGGTGCTGGCCGCCGTGTTCCTGCACGAGCGGCTGA
CGCCCGCCGCGCTGCTGGCGCTGGTGCTGTGTTCGGTGGGCGCGGGCCTGACCGTGGGCGGCGCGGGCCTGGCGGGCGGC
AGCGCAACCGGCGTGGTGCTGGGCGTGGCGGCGGCGGTCATCTACTCGGTCTACATCACGGTGGGCGCGCGCGTGACGCG
CGGCGTCGATCCGATTGCGTGCACCACCCTCATCTGCACAGCGGCGGCGGTGGTCTACGCGGGCGCGGCGGTGGCCGGCG
TGCCCGCGCGGTTTCCCGGCAGCGTTGCCGGCTGGGCCGCGGCGCTGGCGATCGCGGGGCTGTCGACGGTGATCGCCATC
CTCGCGTTCTTTGCGGGCTTGCAGCGGCTGGGGGCGGCGCAGGCGTCGATGCTGTCGACGCTGGAGCCGGTCGTGACCGT
GGCGCTGGCCGCGCTGCTGCTGGGCGAATCGATCGGCGCCGCACAGATGGCCGGCGGGGCGCTGATCCTGGCCGGCGTGC
TGTGGCTCACCCGCGCCGATGCACGTCCCGGCGGGCACCGGACCGACGACATGGCGTAA

Upstream 100 bases:

>100_bases
CCGCCATTGTACCGGTGCGCCCGCCAGGCAGCGCGCGGCGGCACCGACGCTACAATGGCCGCCTCGCCCGCCAAGACGGC
GTCCGCACGCCGCGTGCCTC

Downstream 100 bases:

>100_bases
AGAAAACGGCCCGGCGCGAACCGGGCCGTTGCATCGCGAAACGCGTTGTCGGAGGGCGCAGCGTTACGGCTTCGGTCCGC
CCGGCGGCCGCTGCAGGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MRPSTAAASLSARAADKLLGVLLIAVSAASFGAMAIFTHYAYASGADTVGLLAVRFSLAALALTAVMRVRRIGLPPWPRV
AGLAAMGGIGYAGQSFAFFTALHYAPASLVALLLYLYPMFVTVLAAVFLHERLTPAALLALVLCSVGAGLTVGGAGLAGG
SATGVVLGVAAAVIYSVYITVGARVTRGVDPIACTTLICTAAAVVYAGAAVAGVPARFPGSVAGWAAALAIAGLSTVIAI
LAFFAGLQRLGAAQASMLSTLEPVVTVALAALLLGESIGAAQMAGGALILAGVLWLTRADARPGGHRTDDMA

Sequences:

>Translated_312_residues
MRPSTAAASLSARAADKLLGVLLIAVSAASFGAMAIFTHYAYASGADTVGLLAVRFSLAALALTAVMRVRRIGLPPWPRV
AGLAAMGGIGYAGQSFAFFTALHYAPASLVALLLYLYPMFVTVLAAVFLHERLTPAALLALVLCSVGAGLTVGGAGLAGG
SATGVVLGVAAAVIYSVYITVGARVTRGVDPIACTTLICTAAAVVYAGAAVAGVPARFPGSVAGWAAALAIAGLSTVIAI
LAFFAGLQRLGAAQASMLSTLEPVVTVALAALLLGESIGAAQMAGGALILAGVLWLTRADARPGGHRTDDMA
>Mature_312_residues
MRPSTAAASLSARAADKLLGVLLIAVSAASFGAMAIFTHYAYASGADTVGLLAVRFSLAALALTAVMRVRRIGLPPWPRV
AGLAAMGGIGYAGQSFAFFTALHYAPASLVALLLYLYPMFVTVLAAVFLHERLTPAALLALVLCSVGAGLTVGGAGLAGG
SATGVVLGVAAAVIYSVYITVGARVTRGVDPIACTTLICTAAAVVYAGAAVAGVPARFPGSVAGWAAALAIAGLSTVIAI
LAFFAGLQRLGAAQASMLSTLEPVVTVALAALLLGESIGAAQMAGGALILAGVLWLTRADARPGGHRTDDMA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31008; Mature: 31008

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSTAAASLSARAADKLLGVLLIAVSAASFGAMAIFTHYAYASGADTVGLLAVRFSLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LALTAVMRVRRIGLPPWPRVAGLAAMGGIGYAGQSFAFFTALHYAPASLVALLLYLYPMF
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTVLAAVFLHERLTPAALLALVLCSVGAGLTVGGAGLAGGSATGVVLGVAAAVIYSVYIT
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
VGARVTRGVDPIACTTLICTAAAVVYAGAAVAGVPARFPGSVAGWAAALAIAGLSTVIAI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAFFAGLQRLGAAQASMLSTLEPVVTVALAALLLGESIGAAQMAGGALILAGVLWLTRAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCC
ARPGGHRTDDMA
CCCCCCCCCCCC
>Mature Secondary Structure
MRPSTAAASLSARAADKLLGVLLIAVSAASFGAMAIFTHYAYASGADTVGLLAVRFSLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LALTAVMRVRRIGLPPWPRVAGLAAMGGIGYAGQSFAFFTALHYAPASLVALLLYLYPMF
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTVLAAVFLHERLTPAALLALVLCSVGAGLTVGGAGLAGGSATGVVLGVAAAVIYSVYIT
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
VGARVTRGVDPIACTTLICTAAAVVYAGAAVAGVPARFPGSVAGWAAALAIAGLSTVIAI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAFFAGLQRLGAAQASMLSTLEPVVTVALAALLLGESIGAAQMAGGALILAGVLWLTRAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCC
ARPGGHRTDDMA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA