| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545686
Identifier: 17545686
GI number: 17545686
Start: 1013903
End: 1016704
Strand: Direct
Name: 17545686
Synonym: RSc0967
Alternate gene names: NA
Gene position: 1013903-1016704 (Clockwise)
Preceding gene: 17545685
Following gene: 17545690
Centisome position: 27.28
GC content: 65.74
Gene sequence:
>2802_bases ATGCACACGCAACACAGCCCCGCCTTGCGCACGTGGTTCGACCAGCTCAAGCGCGACATTGACCTGCATGACCTGGCTGA ACGGCTCGACCTGCGCCGTAGTGGCGCAAAGGGCAACTACCACAGCCCGCACCACACCGACCGTAGCGCCTCGCTGTCGA TCTTCGAGCGCGGCCGCGCCTGGAAAGATTGGTCGACCGAGGCGGGCGGTTCCTGCATTGATCTTGTGCAGCACTGCATG CCCGATGTAGCGACGCCGATGGAGGCCGCAAAGCTGCTGGGCCAGTGGTACGGCATCCCCATGCCGGCCGCACCGGCAAG CGCCTTGCTCGCCCGCAAGAGCACCGAGGAATACATCGCCGAGCGTGCCCAGGCCAACCCGGAACCGGCCGTCGCCTATC TCGCCGGCCGTGGCGTCGATGAAGCCGTCAGCCGCCGTGCCATTCAGACCGGCGCGCTTGGCTGGAACGCCTGGAACAGT CCCAAGGTGCCGGCCGGCGAGGCGGGCCACGGCGGGCCGGCGGCGGCCTTCATCGTGCGCGCCATGGATACGGCGCGCGT GGTGGCGGTCGACCTGCGCTATGCCGATCCGGCGATCAACGGCAACGTCAAGACGCAATGCCAAGGCGACAAGCTCGGTC ACGGCTGGACGAGCGATGCGCGCCGCTTGCGGCACGCGCATACCGTCTACATCGTGGAAAGCCCCATCAACGCCCTGTCG GTCGAGTGTTGCCACTTGCCCGAAGGCACCGCAGCATTTGCCCTTCGCGGCACCGCCAATGTGGACAAGATCGACTGGAC GTTCCTGCGCGGCAAGCGTGTGGTGATCGCGCTTGACCACACGGACCCTGTGAACGAGCGCACCGGCATGCGTCCGGGCC TTGCTGCCGCCTGGAAGCTGTCCGAAGCGCTGACCGCCGCCGACATTGGCGCGATGCTGGTGGACATGCAGGATTGGGAG GAAGGCGAAGATATCAACGACGTTCTGCAAGCCCACGGCGCGGCTGAATTGACCGCCCGCATGCGGCGCCTGGAAGCGTG GTTGATTCCCGGCATGCCGGGCGGCGGCGAGCGCTTGAGCGGCACCCGCCGCGTCTTCCTGCCGCCCCATGACTTCGGCA TCTATTGGCGCTTCCGCGTCAAAGAGGACTTCACCCAATACGTGGAGAAGTTCAAGGATGCGGACGACGAGGACGGGCAG ACCAGCCGCAGCGAGGAGTTAGGCGACCTGTGCGCCTTCCGCGTCGCGGGGCTGTCGCGCCTGCGCGTCCAAAGCCATCT GGCCACCATCAACGGCACGGCCGACAGCCAGCCCGAAACCGTGTTCGGGATCAGCGCCCAGGTGGCCCGCCACGGGGCGA CGCTGCAACGCGAAGTGGTCGGCAATGACAAGCTCTATAACCTTGAGTGGTGGCGCGGTAAGTTCGGCCATATCTGGATG CCGTCGCAGTTTGCCCGCATGGTCAACGTGCTGGAGCGCGCCGCCGACCTGGGCGCGCGCGATGTGGTCAACTTCGTCGG CTTGGCGTGGCGTGGCGGCGAACTGGCGGCGCTGGAAGGCAGCGACTGCTACTTTGTGGAGCCGCAGAAACAGTGCCTGT ACTACAACATGCGTTTCCCGCGCAGCACTGCGCAGAGCGCCCGCGCCGTGATCGACGCCTATCAGGCCACGTTCAAGGGC AACGCCGCCGCTATCGCCCTGGTATGGGCTTTGGGCACGCACCTGAAAACGGTCCTGGGCTTCTATCCGCATTTGCAGAT GCAGGCAGAGAAAGGGGCGGGCAAGTCCAAGCTGCTGGAAAGCCTCCAAGCGACGGCATCCTTCCAAGTGCTGTCGGGCC AGATGCTGAAGACTGACCACCGCCGCCGCGCATCGGTGTCGTGGACTTCGCACCCTGTGGGATGGGACGAGTTCTCCAAG CTGCCCAAGGCCGTGCTGTCCGAGATCGACGGGCTACTGCAATCGACCTACCGCTTCGAGTTCACCCGCGTCGGCGCGGC GCTCACCCCCTACCTGATGTGCGCGCCGGTCCTGCTGGCCGGCGAGGAAGTAGACGTCGAAAGCCTGCAATCGAAAATCT GCCGCACGTCGCTGTCGGTCGATAAGCAGGGAGCCATCCTCCCGCGCAACCTGCCGCAGTTCCCCGTGTGGGCGTGGTTG CAGTTTCTCGCGAGCCAGCAACCGGAGCGCATCCGCGATCTGCATGCGGCGTTTGTGGACGTGAGCCTGAGCCGCAGCCG CGCCGAGACGAACGACGCCACGGCCCGCCGCATGGTGGAGAACTACGCCGCCATCATGACGGCCTGGGCGCTGCTGGCCG AGTTCGCGCAGATCGACGTAGAGCAAGGCGGCTTCATCGACCACCTGTTGGTCGAGATGAACGCGCACATCGCGGAGACG GACGGCACGCGCCTGCCCTGGGTGTGGATCATGGAAATCCTGTTGTCCGAGCTGGATGCCGGCCGCTTCGAGCATCCGCA CTGTTGGGACACGATTCAGACCGACAGCGGGCGCGAGATGGCGCTGTTCCTGCGGCCCAGTCACGTGATGGACCACCTCT CCACGGCGATGCACCTGCGCGGCAAGTTCGACGCGCTGCCGATCAAGACGGCCCGCGTGTTCAAGCAGCAGCTATTGCAG TCGGGCGTGGTGCCGCAGCACGGCGGCAAGCGGTTGGAAGACGTGGAAAAACGTATCCTGGGCCGGCGCTGCGCGCATAT GGCGGCTATCAGCCTGCCCAGGCTCGAACAGCGCGGCCTGTATGCCTCGCCAGCGCTGGCTGCCTATCAGATGGCGTCAT AG
Upstream 100 bases:
>100_bases GCCCCCGGCTACCGCAGCCTGCATTGCCTGCTGGTGCTGGTGAAGCAACAGCTAGACGGCGCCATCGGCACCGTGACCGA AATGCTTTGAAGGGGGGCAC
Downstream 100 bases:
>100_bases CCGACGCTAGGCGCACGGCGCCCCTTTCTCTGCCCGGCCAAGGCCCCCGCAATACGCGGGGGCCTTGTGCATTTTGGAGC GGCGCGACGAGTGGCCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 933; Mature: 933
Protein sequence:
>933_residues MHTQHSPALRTWFDQLKRDIDLHDLAERLDLRRSGAKGNYHSPHHTDRSASLSIFERGRAWKDWSTEAGGSCIDLVQHCM PDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIAERAQANPEPAVAYLAGRGVDEAVSRRAIQTGALGWNAWNS PKVPAGEAGHGGPAAAFIVRAMDTARVVAVDLRYADPAINGNVKTQCQGDKLGHGWTSDARRLRHAHTVYIVESPINALS VECCHLPEGTAAFALRGTANVDKIDWTFLRGKRVVIALDHTDPVNERTGMRPGLAAAWKLSEALTAADIGAMLVDMQDWE EGEDINDVLQAHGAAELTARMRRLEAWLIPGMPGGGERLSGTRRVFLPPHDFGIYWRFRVKEDFTQYVEKFKDADDEDGQ TSRSEELGDLCAFRVAGLSRLRVQSHLATINGTADSQPETVFGISAQVARHGATLQREVVGNDKLYNLEWWRGKFGHIWM PSQFARMVNVLERAADLGARDVVNFVGLAWRGGELAALEGSDCYFVEPQKQCLYYNMRFPRSTAQSARAVIDAYQATFKG NAAAIALVWALGTHLKTVLGFYPHLQMQAEKGAGKSKLLESLQATASFQVLSGQMLKTDHRRRASVSWTSHPVGWDEFSK LPKAVLSEIDGLLQSTYRFEFTRVGAALTPYLMCAPVLLAGEEVDVESLQSKICRTSLSVDKQGAILPRNLPQFPVWAWL QFLASQQPERIRDLHAAFVDVSLSRSRAETNDATARRMVENYAAIMTAWALLAEFAQIDVEQGGFIDHLLVEMNAHIAET DGTRLPWVWIMEILLSELDAGRFEHPHCWDTIQTDSGREMALFLRPSHVMDHLSTAMHLRGKFDALPIKTARVFKQQLLQ SGVVPQHGGKRLEDVEKRILGRRCAHMAAISLPRLEQRGLYASPALAAYQMAS
Sequences:
>Translated_933_residues MHTQHSPALRTWFDQLKRDIDLHDLAERLDLRRSGAKGNYHSPHHTDRSASLSIFERGRAWKDWSTEAGGSCIDLVQHCM PDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIAERAQANPEPAVAYLAGRGVDEAVSRRAIQTGALGWNAWNS PKVPAGEAGHGGPAAAFIVRAMDTARVVAVDLRYADPAINGNVKTQCQGDKLGHGWTSDARRLRHAHTVYIVESPINALS VECCHLPEGTAAFALRGTANVDKIDWTFLRGKRVVIALDHTDPVNERTGMRPGLAAAWKLSEALTAADIGAMLVDMQDWE EGEDINDVLQAHGAAELTARMRRLEAWLIPGMPGGGERLSGTRRVFLPPHDFGIYWRFRVKEDFTQYVEKFKDADDEDGQ TSRSEELGDLCAFRVAGLSRLRVQSHLATINGTADSQPETVFGISAQVARHGATLQREVVGNDKLYNLEWWRGKFGHIWM PSQFARMVNVLERAADLGARDVVNFVGLAWRGGELAALEGSDCYFVEPQKQCLYYNMRFPRSTAQSARAVIDAYQATFKG NAAAIALVWALGTHLKTVLGFYPHLQMQAEKGAGKSKLLESLQATASFQVLSGQMLKTDHRRRASVSWTSHPVGWDEFSK LPKAVLSEIDGLLQSTYRFEFTRVGAALTPYLMCAPVLLAGEEVDVESLQSKICRTSLSVDKQGAILPRNLPQFPVWAWL QFLASQQPERIRDLHAAFVDVSLSRSRAETNDATARRMVENYAAIMTAWALLAEFAQIDVEQGGFIDHLLVEMNAHIAET DGTRLPWVWIMEILLSELDAGRFEHPHCWDTIQTDSGREMALFLRPSHVMDHLSTAMHLRGKFDALPIKTARVFKQQLLQ SGVVPQHGGKRLEDVEKRILGRRCAHMAAISLPRLEQRGLYASPALAAYQMAS >Mature_933_residues MHTQHSPALRTWFDQLKRDIDLHDLAERLDLRRSGAKGNYHSPHHTDRSASLSIFERGRAWKDWSTEAGGSCIDLVQHCM PDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIAERAQANPEPAVAYLAGRGVDEAVSRRAIQTGALGWNAWNS PKVPAGEAGHGGPAAAFIVRAMDTARVVAVDLRYADPAINGNVKTQCQGDKLGHGWTSDARRLRHAHTVYIVESPINALS VECCHLPEGTAAFALRGTANVDKIDWTFLRGKRVVIALDHTDPVNERTGMRPGLAAAWKLSEALTAADIGAMLVDMQDWE EGEDINDVLQAHGAAELTARMRRLEAWLIPGMPGGGERLSGTRRVFLPPHDFGIYWRFRVKEDFTQYVEKFKDADDEDGQ TSRSEELGDLCAFRVAGLSRLRVQSHLATINGTADSQPETVFGISAQVARHGATLQREVVGNDKLYNLEWWRGKFGHIWM PSQFARMVNVLERAADLGARDVVNFVGLAWRGGELAALEGSDCYFVEPQKQCLYYNMRFPRSTAQSARAVIDAYQATFKG NAAAIALVWALGTHLKTVLGFYPHLQMQAEKGAGKSKLLESLQATASFQVLSGQMLKTDHRRRASVSWTSHPVGWDEFSK LPKAVLSEIDGLLQSTYRFEFTRVGAALTPYLMCAPVLLAGEEVDVESLQSKICRTSLSVDKQGAILPRNLPQFPVWAWL QFLASQQPERIRDLHAAFVDVSLSRSRAETNDATARRMVENYAAIMTAWALLAEFAQIDVEQGGFIDHLLVEMNAHIAET DGTRLPWVWIMEILLSELDAGRFEHPHCWDTIQTDSGREMALFLRPSHVMDHLSTAMHLRGKFDALPIKTARVFKQQLLQ SGVVPQHGGKRLEDVEKRILGRRCAHMAAISLPRLEQRGLYASPALAAYQMAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103479; Mature: 103479
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTQHSPALRTWFDQLKRDIDLHDLAERLDLRRSGAKGNYHSPHHTDRSASLSIFERGRA CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC WKDWSTEAGGSCIDLVQHCMPDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIA CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHH ERAQANPEPAVAYLAGRGVDEAVSRRAIQTGALGWNAWNSPKVPAGEAGHGGPAAAFIVR HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AMDTARVVAVDLRYADPAINGNVKTQCQGDKLGHGWTSDARRLRHAHTVYIVESPINALS HHCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEEEEECCCCCEE VECCHLPEGTAAFALRGTANVDKIDWTFLRGKRVVIALDHTDPVNERTGMRPGLAAAWKL EEEEECCCCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCHHCCCCCCHHHHHHH SEALTAADIGAMLVDMQDWEEGEDINDVLQAHGAAELTARMRRLEAWLIPGMPGGGERLS HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GTRRVFLPPHDFGIYWRFRVKEDFTQYVEKFKDADDEDGQTSRSEELGDLCAFRVAGLSR CCCEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LRVQSHLATINGTADSQPETVFGISAQVARHGATLQREVVGNDKLYNLEWWRGKFGHIWM HHHHHHHHEECCCCCCCCCEEEEHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCEEC PSQFARMVNVLERAADLGARDVVNFVGLAWRGGELAALEGSDCYFVEPQKQCLYYNMRFP CHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCEEEEECCCCEEEECCCCCEEEEEECCC RSTAQSARAVIDAYQATFKGNAAAIALVWALGTHLKTVLGFYPHLQMQAEKGAGKSKLLE CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH SLQATASFQVLSGQMLKTDHRRRASVSWTSHPVGWDEFSKLPKAVLSEIDGLLQSTYRFE HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FTRVGAALTPYLMCAPVLLAGEEVDVESLQSKICRTSLSVDKQGAILPRNLPQFPVWAWL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH QFLASQQPERIRDLHAAFVDVSLSRSRAETNDATARRMVENYAAIMTAWALLAEFAQIDV HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EQGGFIDHLLVEMNAHIAETDGTRLPWVWIMEILLSELDAGRFEHPHCWDTIQTDSGREM CCCCHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE ALFLRPSHVMDHLSTAMHLRGKFDALPIKTARVFKQQLLQSGVVPQHGGKRLEDVEKRIL EEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH GRRCAHMAAISLPRLEQRGLYASPALAAYQMAS HHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCC >Mature Secondary Structure MHTQHSPALRTWFDQLKRDIDLHDLAERLDLRRSGAKGNYHSPHHTDRSASLSIFERGRA CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC WKDWSTEAGGSCIDLVQHCMPDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIA CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHH ERAQANPEPAVAYLAGRGVDEAVSRRAIQTGALGWNAWNSPKVPAGEAGHGGPAAAFIVR HHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AMDTARVVAVDLRYADPAINGNVKTQCQGDKLGHGWTSDARRLRHAHTVYIVESPINALS HHCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHEEEEEEECCCCCEE VECCHLPEGTAAFALRGTANVDKIDWTFLRGKRVVIALDHTDPVNERTGMRPGLAAAWKL EEEEECCCCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCHHCCCCCCHHHHHHH SEALTAADIGAMLVDMQDWEEGEDINDVLQAHGAAELTARMRRLEAWLIPGMPGGGERLS HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GTRRVFLPPHDFGIYWRFRVKEDFTQYVEKFKDADDEDGQTSRSEELGDLCAFRVAGLSR CCCEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LRVQSHLATINGTADSQPETVFGISAQVARHGATLQREVVGNDKLYNLEWWRGKFGHIWM HHHHHHHHEECCCCCCCCCEEEEHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCEEC PSQFARMVNVLERAADLGARDVVNFVGLAWRGGELAALEGSDCYFVEPQKQCLYYNMRFP CHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCEEEEECCCCEEEECCCCCEEEEEECCC RSTAQSARAVIDAYQATFKGNAAAIALVWALGTHLKTVLGFYPHLQMQAEKGAGKSKLLE CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH SLQATASFQVLSGQMLKTDHRRRASVSWTSHPVGWDEFSKLPKAVLSEIDGLLQSTYRFE HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FTRVGAALTPYLMCAPVLLAGEEVDVESLQSKICRTSLSVDKQGAILPRNLPQFPVWAWL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH QFLASQQPERIRDLHAAFVDVSLSRSRAETNDATARRMVENYAAIMTAWALLAEFAQIDV HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EQGGFIDHLLVEMNAHIAETDGTRLPWVWIMEILLSELDAGRFEHPHCWDTIQTDSGREM CCCCHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE ALFLRPSHVMDHLSTAMHLRGKFDALPIKTARVFKQQLLQSGVVPQHGGKRLEDVEKRIL EEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH GRRCAHMAAISLPRLEQRGLYASPALAAYQMAS HHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA