| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545670
Identifier: 17545670
GI number: 17545670
Start: 999181
End: 1000479
Strand: Direct
Name: 17545670
Synonym: RSc0951
Alternate gene names: NA
Gene position: 999181-1000479 (Clockwise)
Preceding gene: 17545669
Following gene: 17545672
Centisome position: 26.89
GC content: 70.59
Gene sequence:
>1299_bases ATGGCCGAATTCTTTATGCTCCCCGACCCGACGTTCATCGGGGCGCTTTCCGACTGGAACGATGGGCGCCGCTTGCCGCG CCAGGGCATCGCCCACAGCCTGGTCGATGCGCGCAACCGAACGCTGGCCCTGCTGGCCGCCTTCGGCGATACGCAGCGCG GCTGGCAGATCGAGCGCGTGCTCCATCATGCGCCGCCACTGTGGACGCTCGGGCAACTGGCCTGGTTTGCCGAATTCTGG TGTCTGCGCGAGCCGCGCCGTGTCGGTGAGGACGCGGTCGAGGACGGCGGCGGCACCGAATGGGCGCTGCCGCGCTGGCA GGCGACCCTGCCGGCCGGGCTGGACGGTGCCGACAGCTTTTTCGACATGGACCGCATGCCGCCCGACGCCTGCTGGGCGC TGACGCTGCCGGGCATCGCGACGATCAAGCAGTACGCGCACGATGTCCTCGACCGCGTGCTGCGCAAGCTGGCGACGCTC GGCACCGATGAGGACGCGGCGCTCGAGCCGTTCCGCTGGGCGGTGTTCCATGAAGACTTGCGCGCCGAGCATCTGCATGG CCTGCTGCAGGTCCTGGGGTTGCAGCCGGCCGGGCAGCCGCCGCTGGCGGCCGTGGTGGTGCCCGCCGCGCGGACGCTGT CCCTGCCCGGCGGCCGCTTCCAGATGGGGTGGCCCGATGCCGACGGCTTCGTGTTCGACAACGAGTGTCCGCCGCACCGG ACCTACGTGCCGGCCTTCGAGATCGACGCGCAGCCAGTCACCAACGGCCAGTATCTGGAGTTTGTCGAAGACGGCGGTTA CGACCATCCGCAATGGTGGTCGGCCGCGGGCATGGAATGGCTGATGATGCAGGAGCGCTCGGCGCCGCTCGGCTGGCGTC GCGATCCGGCCTCGCGCACGTGGCAGGTGGTGCGGTATGGCCAGCCGCGCACGCTCAATCGCGACGAGCCGGCGCGCCAC GTCAGCCTGTACGAGGCGCAGGCGTGGTGCCGCTGGGCCGGCCGCCGCCTGCCGACCGAAGACGAATGGGAGATGGCCGC CGTGCTTGGCCGCGCGGGCTTCCACTGGGGGCAGGTGTGGGAGTGGACGTCGTCGCCATTCGAGCCGTACCCCGATTTCG TGCCGGGTGCGCCGCGCGGGCGGGTGGCGACGCTGTCCGCGCCGCATTTCATGACCATGCAGACGGTGCGGGGCGCGGCA GCGCATACGCCGCAGCGGGTGCGGCATCCGCGCTTCCGCGGTTTCCTGCTGCCGGAGCGGGATGATGTCTTTGTCGGCTT CCGCACCTGCGCCCTGTAA
Upstream 100 bases:
>100_bases CACGCCTGTGTCGGCCGGTAGAGGCCCACGCCGTCGGGCGGGAAGAGGCGGTGGACCGGTGCGATAATGAAACGGTCCCC GCTTGCCAGAGGTCGCCGCG
Downstream 100 bases:
>100_bases AGCGGGCGCCGGAAAACAGAAAGGCCCCGGATGGGGCCTTTCTTCATGGCGGCGATGCGCGTAGCCGATCAGCGATCGAA ATCGCGCGAGCGGCCCTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MAEFFMLPDPTFIGALSDWNDGRRLPRQGIAHSLVDARNRTLALLAAFGDTQRGWQIERVLHHAPPLWTLGQLAWFAEFW CLREPRRVGEDAVEDGGGTEWALPRWQATLPAGLDGADSFFDMDRMPPDACWALTLPGIATIKQYAHDVLDRVLRKLATL GTDEDAALEPFRWAVFHEDLRAEHLHGLLQVLGLQPAGQPPLAAVVVPAARTLSLPGGRFQMGWPDADGFVFDNECPPHR TYVPAFEIDAQPVTNGQYLEFVEDGGYDHPQWWSAAGMEWLMMQERSAPLGWRRDPASRTWQVVRYGQPRTLNRDEPARH VSLYEAQAWCRWAGRRLPTEDEWEMAAVLGRAGFHWGQVWEWTSSPFEPYPDFVPGAPRGRVATLSAPHFMTMQTVRGAA AHTPQRVRHPRFRGFLLPERDDVFVGFRTCAL
Sequences:
>Translated_432_residues MAEFFMLPDPTFIGALSDWNDGRRLPRQGIAHSLVDARNRTLALLAAFGDTQRGWQIERVLHHAPPLWTLGQLAWFAEFW CLREPRRVGEDAVEDGGGTEWALPRWQATLPAGLDGADSFFDMDRMPPDACWALTLPGIATIKQYAHDVLDRVLRKLATL GTDEDAALEPFRWAVFHEDLRAEHLHGLLQVLGLQPAGQPPLAAVVVPAARTLSLPGGRFQMGWPDADGFVFDNECPPHR TYVPAFEIDAQPVTNGQYLEFVEDGGYDHPQWWSAAGMEWLMMQERSAPLGWRRDPASRTWQVVRYGQPRTLNRDEPARH VSLYEAQAWCRWAGRRLPTEDEWEMAAVLGRAGFHWGQVWEWTSSPFEPYPDFVPGAPRGRVATLSAPHFMTMQTVRGAA AHTPQRVRHPRFRGFLLPERDDVFVGFRTCAL >Mature_431_residues AEFFMLPDPTFIGALSDWNDGRRLPRQGIAHSLVDARNRTLALLAAFGDTQRGWQIERVLHHAPPLWTLGQLAWFAEFWC LREPRRVGEDAVEDGGGTEWALPRWQATLPAGLDGADSFFDMDRMPPDACWALTLPGIATIKQYAHDVLDRVLRKLATLG TDEDAALEPFRWAVFHEDLRAEHLHGLLQVLGLQPAGQPPLAAVVVPAARTLSLPGGRFQMGWPDADGFVFDNECPPHRT YVPAFEIDAQPVTNGQYLEFVEDGGYDHPQWWSAAGMEWLMMQERSAPLGWRRDPASRTWQVVRYGQPRTLNRDEPARHV SLYEAQAWCRWAGRRLPTEDEWEMAAVLGRAGFHWGQVWEWTSSPFEPYPDFVPGAPRGRVATLSAPHFMTMQTVRGAAA HTPQRVRHPRFRGFLLPERDDVFVGFRTCAL
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI194248087, Length=156, Percent_Identity=34.6153846153846, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48930; Mature: 48799
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEFFMLPDPTFIGALSDWNDGRRLPRQGIAHSLVDARNRTLALLAAFGDTQRGWQIERV CCCEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH LHHAPPLWTLGQLAWFAEFWCLREPRRVGEDAVEDGGGTEWALPRWQATLPAGLDGADSF HHCCCCCHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH FDMDRMPPDACWALTLPGIATIKQYAHDVLDRVLRKLATLGTDEDAALEPFRWAVFHEDL HHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RAEHLHGLLQVLGLQPAGQPPLAAVVVPAARTLSLPGGRFQMGWPDADGFVFDNECPPHR HHHHHHHHHHHHCCCCCCCCCEEEEEECCHHEECCCCCEEECCCCCCCCEEECCCCCCCC TYVPAFEIDAQPVTNGQYLEFVEDGGYDHPQWWSAAGMEWLMMQERSAPLGWRRDPASRT EECCEEECCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEHHHCCCCCCCCCCCCCCC WQVVRYGQPRTLNRDEPARHVSLYEAQAWCRWAGRRLPTEDEWEMAAVLGRAGFHWGQVW EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEE EWTSSPFEPYPDFVPGAPRGRVATLSAPHFMTMQTVRGAAAHTPQRVRHPRFRGFLLPER ECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCEEECCCC DDVFVGFRTCAL CCEEEEEHHHCC >Mature Secondary Structure AEFFMLPDPTFIGALSDWNDGRRLPRQGIAHSLVDARNRTLALLAAFGDTQRGWQIERV CCEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH LHHAPPLWTLGQLAWFAEFWCLREPRRVGEDAVEDGGGTEWALPRWQATLPAGLDGADSF HHCCCCCHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH FDMDRMPPDACWALTLPGIATIKQYAHDVLDRVLRKLATLGTDEDAALEPFRWAVFHEDL HHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RAEHLHGLLQVLGLQPAGQPPLAAVVVPAARTLSLPGGRFQMGWPDADGFVFDNECPPHR HHHHHHHHHHHHCCCCCCCCCEEEEEECCHHEECCCCCEEECCCCCCCCEEECCCCCCCC TYVPAFEIDAQPVTNGQYLEFVEDGGYDHPQWWSAAGMEWLMMQERSAPLGWRRDPASRT EECCEEECCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEHHHCCCCCCCCCCCCCCC WQVVRYGQPRTLNRDEPARHVSLYEAQAWCRWAGRRLPTEDEWEMAAVLGRAGFHWGQVW EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEE EWTSSPFEPYPDFVPGAPRGRVATLSAPHFMTMQTVRGAAAHTPQRVRHPRFRGFLLPER ECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCEEECCCC DDVFVGFRTCAL CCEEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA