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The map label for this gene is rimM

Identifier: 17545653

GI number: 17545653

Start: 984633

End: 985187

Strand: Direct

Name: rimM

Synonym: RSc0934

Alternate gene names: 17545653

Gene position: 984633-985187 (Clockwise)

Preceding gene: 17545652

Following gene: 17545654

Centisome position: 26.49

GC content: 68.65

Gene sequence:

>555_bases
ATGCGTCCGGGAGCCGGCGCGAACCCGTCGCTGCCCGACGATCTGGTCGAGGTGGGCTACGTGGGCGGTGCCTATGGCGT
TCGCGGCTGGATCAAGGTGCAGCCGCACGGCGATGCCGAGGCGTTGCTGCACGCGAGCACTTGGTGGCTGAAGCCGGCTG
CCGGTGCGCCTGCCGTTTCGTCCGACTGGCGGGTGCTGCCCGTCGGGACCTCGCGGGAGCACAGCGGTTCGGTGGTGGCA
GGGTCGCCCGCCGTGCCGGATCGCAATGTCGCCGAGGCGCTGCGCGGCTGTACCGTGTGGGTCCGCCGTGCCGAGTTTCC
CGCGCCGGCCGACGACGAGTTCTACTGGGTCGACCTGATCGGCTCGACGGTCGTCAATGAGCAGCAGGAAACGCTCGGCA
CGGTCGCCGGGCTGATCGACAACGGTGCGCACCAGATCCTGCGCATCGTGGACGAAGGCGGTACCGAGCGGCTCGTGCCG
TTCGTCGAGGTGTATGTGAAGTCGGTGGATGTGGCGGGCAAGCACATCGTCGTCGACTGGGGCCTGGATTACTGA

Upstream 100 bases:

>100_bases
CGTGACGCGCCCCATGTCGACGCAGATTCGCACGCGGCCCGGTCCGCTAGCGGCCTCCGCTCAGGCTACCTCGCAAAAGG
TGGCGGAGCGTCTGGCAGGC

Downstream 100 bases:

>100_bases
ACATGCGGCCGGAGAATTCGGCAATGCAGTTCGATGTCATCTCGCTGTTCCCGGAGATGTTCCGGGCGTTGACCGACTGG
GGGATCACCAGCCGGGCAGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRPGAGANPSLPDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVSSDWRVLPVGTSREHSGSVVA
GSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLIGSTVVNEQQETLGTVAGLIDNGAHQILRIVDEGGTERLVP
FVEVYVKSVDVAGKHIVVDWGLDY

Sequences:

>Translated_184_residues
MRPGAGANPSLPDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVSSDWRVLPVGTSREHSGSVVA
GSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLIGSTVVNEQQETLGTVAGLIDNGAHQILRIVDEGGTERLVP
FVEVYVKSVDVAGKHIVVDWGLDY
>Mature_184_residues
MRPGAGANPSLPDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVSSDWRVLPVGTSREHSGSVVA
GSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLIGSTVVNEQQETLGTVAGLIDNGAHQILRIVDEGGTERLVP
FVEVYVKSVDVAGKHIVVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RALSO (Q8Y0V9)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_519055.1
- ProteinModelPortal:   Q8Y0V9
- SMR:   Q8Y0V9
- GeneID:   1219742
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc0934
- NMPDR:   fig|267608.1.peg.934
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   RSOL267608:RSC0934-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19649; Mature: 19649

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPGAGANPSLPDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHEEECHHEEECCCCCCCCCC
SDWRVLPVGTSREHSGSVVAGSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLI
CCCEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEC
GSTVVNEQQETLGTVAGLIDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKHIVVDW
CCHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
GLDY
CCCC
>Mature Secondary Structure
MRPGAGANPSLPDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHEEECHHEEECCCCCCCCCC
SDWRVLPVGTSREHSGSVVAGSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLI
CCCEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEC
GSTVVNEQQETLGTVAGLIDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKHIVVDW
CCHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
GLDY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852