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The map label for this gene is yciM [H]

Identifier: 17545631

GI number: 17545631

Start: 963264

End: 964541

Strand: Direct

Name: yciM [H]

Synonym: RSc0912

Alternate gene names: 17545631

Gene position: 963264-964541 (Clockwise)

Preceding gene: 17545630

Following gene: 17545632

Centisome position: 25.92

GC content: 68.08

Gene sequence:

>1278_bases
ATGGATTTTGATCTCTGGTGGCTGCTGGCCATCCCCCTGGTGTTCGGCTTGGGCTGGGTGGCGGCCCGGCTGGATGCCCG
ACAACTGCTGACCGAACAGGCGTCGCTGCCGCGCTCCTATTTCAAGGGGCTGAATTTCCTCCTCAACGAGCAGCCGGACA
AGGCGATCGACGCCTTCATCGAAGTCGCGCGCCTGGACCCCGAAACCACCGAGCTGCACTTCGCGCTGGGCAGCCTGTTC
CGCCGCCGCGGCGAAACCGAGCGCGCCATCCGCGTGCACCAGAACCTGGTCAACCGGCCGGACTTGCCGGCCAACGAGCG
CGACCACGCGCTGTATGAGCTGGGCCAGGATTTCCTGCGTGCCGGCCTGCTGGACCGTGCCGAAGAATCGCTGCGCATGC
TGATGGAAGGCGTGTTTGCCGAGCCGGCCAAGCGCGTGCTGCTGGAGCTGTACGAGGTCGAGAAAGAGTGGCGCAAGGCG
ATCGATGCCGCGCGCGAACTGCAGACGCTGCAGGGCCAGGATTATTCGGTGCAGATCGCCCAGTTCTGCTGCGAGCTGGC
GCAGGAATCGCTGCAGCGCAAGGACGTGTCGGCTGCCGTCGAATGGCTTGAGCGCGCCCTGCAGGAGAACCCGAAGAACG
TTCGCGCCACCATCCAGCTGGGCGACGTGGCGCTGGGCAAGGGCGATACCGAAGGCGCGATCAAGCGCTGGCGCAGCATC
GAGCAGCAGAACCCGGCCTTCCTGCCGCTGGTGGCCGAGCGCCTGATGAAAGCCTACGCGCAGCTCGGCCGTGCCGCCGA
GGGCCTGGCCTGGCTGCGCTCCAAGATGGACGCGCGCCTTGGCCCCGAGCTGCTGGACGTCGTCTACCGCTATGAGCTGG
ACGTGCACGGCATCGACGATGCCGTCGCGCTGATGCGCGAGCAGATCCGCCGCCAGCCTTCGCTGATGGCGCTCACGCGC
CTGGTCGAAGCCGAGGCGACGCGCGCCTCCGAAGCCGTGAGCCACGAGGCCGCGGCGGTTGCCGCGCCCATCAGTGACAG
TGCGCTGGCCGATCCGGTGGAGGCCGGCAGCAACGCCGACATCCAGCGCGCGCAAGACCTCGGCGCCATCCGCGACCTGC
TGCAGAGCCGCACCCGCAACCTGGCCCGCTACACCTGCCAGGAGTGCGGCTTCCGCGCGCGCCTGTTCTATTGGCAATGT
CCGGGCTGCAACCGCTGGGAAACCTACGCGCCGCGCCGTACCGAAGCGCTCGGCGGCAGCGGTGGCGCCAGCATGTAA

Upstream 100 bases:

>100_bases
CAGGCAGCTCGGTCGCATGAAGGCCGAGGAGGCCGTCGAGCCGAAGGCGCCGGTCGTCGCCGATTCTCCCTACCACGTTC
CCGGCCCCAAGGTCTGACGC

Downstream 100 bases:

>100_bases
TTCAGTCCGGCGTGGCCACGGGGCCGCGCCGGCACGTTTTCAACTTTTGAATTATTCGCATGAGAATCACCATCATCGGT
AGCGGCTATGTCGGCCTGGT

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MDFDLWWLLAIPLVFGLGWVAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFIEVARLDPETTELHFALGSLF
RRRGETERAIRVHQNLVNRPDLPANERDHALYELGQDFLRAGLLDRAEESLRMLMEGVFAEPAKRVLLELYEVEKEWRKA
IDAARELQTLQGQDYSVQIAQFCCELAQESLQRKDVSAAVEWLERALQENPKNVRATIQLGDVALGKGDTEGAIKRWRSI
EQQNPAFLPLVAERLMKAYAQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDDAVALMREQIRRQPSLMALTR
LVEAEATRASEAVSHEAAAVAAPISDSALADPVEAGSNADIQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQC
PGCNRWETYAPRRTEALGGSGGASM

Sequences:

>Translated_425_residues
MDFDLWWLLAIPLVFGLGWVAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFIEVARLDPETTELHFALGSLF
RRRGETERAIRVHQNLVNRPDLPANERDHALYELGQDFLRAGLLDRAEESLRMLMEGVFAEPAKRVLLELYEVEKEWRKA
IDAARELQTLQGQDYSVQIAQFCCELAQESLQRKDVSAAVEWLERALQENPKNVRATIQLGDVALGKGDTEGAIKRWRSI
EQQNPAFLPLVAERLMKAYAQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDDAVALMREQIRRQPSLMALTR
LVEAEATRASEAVSHEAAAVAAPISDSALADPVEAGSNADIQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQC
PGCNRWETYAPRRTEALGGSGGASM
>Mature_425_residues
MDFDLWWLLAIPLVFGLGWVAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFIEVARLDPETTELHFALGSLF
RRRGETERAIRVHQNLVNRPDLPANERDHALYELGQDFLRAGLLDRAEESLRMLMEGVFAEPAKRVLLELYEVEKEWRKA
IDAARELQTLQGQDYSVQIAQFCCELAQESLQRKDVSAAVEWLERALQENPKNVRATIQLGDVALGKGDTEGAIKRWRSI
EQQNPAFLPLVAERLMKAYAQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDDAVALMREQIRRQPSLMALTR
LVEAEATRASEAVSHEAAAVAAPISDSALADPVEAGSNADIQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQC
PGCNRWETYAPRRTEALGGSGGASM

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=408, Percent_Identity=31.8627450980392, Blast_Score=217, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47877; Mature: 47877

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDLWWLLAIPLVFGLGWVAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
EVARLDPETTELHFALGSLFRRRGETERAIRVHQNLVNRPDLPANERDHALYELGQDFLR
HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEESLRMLMEGVFAEPAKRVLLELYEVEKEWRKAIDAARELQTLQGQDYSVQIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
QFCCELAQESLQRKDVSAAVEWLERALQENPKNVRATIQLGDVALGKGDTEGAIKRWRSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEECCCCCCHHHHHHHHHH
EQQNPAFLPLVAERLMKAYAQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH
AVALMREQIRRQPSLMALTRLVEAEATRASEAVSHEAAAVAAPISDSALADPVEAGSNAD
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCC
IQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQCPGCNRWETYAPRRTEALGGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCC
GGASM
CCCCC
>Mature Secondary Structure
MDFDLWWLLAIPLVFGLGWVAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
EVARLDPETTELHFALGSLFRRRGETERAIRVHQNLVNRPDLPANERDHALYELGQDFLR
HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEESLRMLMEGVFAEPAKRVLLELYEVEKEWRKAIDAARELQTLQGQDYSVQIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
QFCCELAQESLQRKDVSAAVEWLERALQENPKNVRATIQLGDVALGKGDTEGAIKRWRSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEECCCCCCHHHHHHHHHH
EQQNPAFLPLVAERLMKAYAQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH
AVALMREQIRRQPSLMALTRLVEAEATRASEAVSHEAAAVAAPISDSALADPVEAGSNAD
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCC
IQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQCPGCNRWETYAPRRTEALGGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCC
GGASM
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]