| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is gyrA [H]
Identifier: 17545620
GI number: 17545620
Start: 950444
End: 953101
Strand: Direct
Name: gyrA [H]
Synonym: RSc0901
Alternate gene names: 17545620
Gene position: 950444-953101 (Clockwise)
Preceding gene: 17545618
Following gene: 17545621
Centisome position: 25.57
GC content: 63.69
Gene sequence:
>2658_bases ATGGATCAATTCGCCAAAGAGACACTCCCGGTATCGCTCGAAGAAGAAATGCGCAGTTCATACCTCGCTTACGCCATGAG CGTAATCGTGGGCCGCGCGCTTCCGGACGTGCGGGATGGTCTCAAGCCGGTGCATCGCCGCGTGCTGTACGCGATGCACG AGCTGAACAACGACTGGAACCGTCCCTACAAGAAGTCGGCACGTATCGTCGGTGACGTGATCGGTAAGTACCACCCGCAC GGCGACTCCGCGGTCTATGACACCATCGTGCGGATGGCACAGGATTTCTCGCTGCGCTACATGCTGGTCGACGGCCAGGG CAACTTCGGCTCGGTCGACGGCGACAACGCGGCGGCGATGCGTTACACGGAAATCCGCCTGTCGAAGATCGCCCACGAGC TGCTGGCCGACATCGACAAGGAAACCGTCGATTTCGAGCCGAACTACGACGGCAGCGAAACCGAGCCGTCCATCCTGCCC GCGCGCATTCCGAACTTGCTGATCAACGGCTCGTCCGGGATCGCGGTCGGCATGGCGACCAACATCCCGCCGCACAACCT AAGGGAGGTGGTGGACGGCTGTCTGCACCTGCTGCGCAACCCGGATGCGACGGTCGACGAACTGATCGAGCTGATCCCGG CGCCGGATTTCCCGACCGCCGGCATCATCTACGGCATCTCGGGCGTGCGCGAGGGCTATCGCACCGGCCGTGGCCGCGTG GTGATGCGTGCCAAGACGCACTTCGAGGATATCGACCGCGGTCAGCGCCAGGCGATCATCGTCGATGAGCTGCCCTATCA AGTTAACAAGCGCACGCTGCTCGAGCGGATCGCCGAACTGGTGACCGAAAAGCGCATCGAGGGCATTTCCGATATCCGCG ACGAGTCCGACAAGTCGGGCATGCGCGTGGTGATCGAGCTCAAGCGTGGCGAAGTGCCGGAGGTCGTGCTCAACAACCTC TATAAGAATACGCAGTTGCAGGACACGTTCGGCATGAACATGGTGGCGCTGGTCGACGGCCAGCCCCGCCTGCTGAACCT GCGCCAGATGCTGGAGTGCTTCCTGCTGCACCGCCGCGAGGTGGTGACGCGTCGCACGGTGTTCGATCTGCGCAAGGCGC GCGAGCGGGGGCACATCCTCGAGGGGCTGGCCGTGGCGCTGGCCAATATCGACGAGTTCATCGCCATCATCAAGGCTGCG CCGACACCTCCGATCGCCAAGCAGGAACTGATGGGTCGCAACTGGGATTCGGGCCTGGTGCGCGAGATGCTGTCGCGGGC CGAGAGCGACACCGTCGGCGGCCGTGCCGCCTATCGTCCGGAAGGGCTGCTGCCCGTTTTCGGCATGCAGGAGGGGGGGC TCTACAAGCTGTCCGACACGCAGGCCCAGGAAATCCTGCAGATGCGCCTGCAACGCCTCACGGGGCTGGAGCAGGACAAG ATCGTCCAGGAATACCGCGAAGTGATGGCGCAGATTGCCGACCTGCTGGACATCCTGGCGCGCCCGGAGCGCATTACTGC GATCATCGTCGAGGAACTCACGCTGATTCGCGCGGAATTCGGCGACGAGCGTCGCTCGCAGATCGAGCATAATGCGACCG AGTTGGACACCGAAGACCTCATTACGCCGCAGGATCTGGTGGTGACGCTGTCCCACAGCGGCTATATGAAGAGCCAGCCG ATCTCCGAATACCGCGCGCAGAAGCGTGGCGGGCGCGGCAAGCAAGCCGCCGCCACCAAGGAAGATGACTGGATCGACAC GCTATTTGTCGCCAACACGCACGATTACATCCTCTGCTTCTCCAATCGCGGCCGTCTCTACTGGCTCAAGGTGTGGGAGG TGCCGCAAGGCAGCCGCAATTCGCGCGGGCGCCCGATCGTCAACATGTTCCCGCTGTCGCCCGGCGAGAAGATCAATGTG ATCTTGCCGGTCAAGCAGTTCGATGAGCAGCACTTCGTCTTCATGGCCACTTCCAAGGGCACGGTCAAGAAAACGGCGCT CACCGAATTCTCCAACCCGCGCAAGGCCGGCATCATCGCCGTGGACCTCGATGACGGCGATTTCCTGATCGGCGCGGATA TCACCGATGGCCAGCATGATGTGATGCTGTTCTCGGACGCCGGCAAGGCGGTCCGCTTTGACGAGAACGATGTCCGCCCG ATGGGCCGTCAGGCGCGCGGGGTGCGGGGCATGAACCTGGAGGAAGGCCAGCAGGTGATCGCCATGCTGGTGGCGCCGGC CGAAACGGCGGGCGAAGGCGAGCAGGCGGTGGCGGGCAGTGTGCTGACCGCTACCGAGAACGGCTACGGCAAGCGCACGC CGATCTCCGAGTACACCCGCCATGGCCGCGGCACCAAGGGCATGATCGCGATCCAGACCTCCGAGCGCAACGGCAAGGTG GTCGCGGCCGCGCTGGTGGCGCCCGAGGACGAGATCATGCTGATCACGACCGGCGGTGTGCTGATCCGTACCCGCGTGGA TGAGATCCGCGAGATGGGGCGCGCCACCCAGGGCGTCACGCTGATTGCTGTGGGCGAGGGTAACAAATTGTCCGGGCTGC AACGTGTGGTGGAGTCGGATGCCGAGGGCGAAGATGCCGCCGATGGCGGGCCGGAATCCGATGGCGAAGCGCCGGACGCG GATACCGCCGAAACATAA
Upstream 100 bases:
>100_bases GTCGCCTCCGGCAGTGAGGGGGGAGGGCTGGCGGCATGGTAAAATAGTCTGTTATTCGCGCAACCGCAGCGCCCTTTGCG GGGCCCCCATCGTTCGCCCA
Downstream 100 bases:
>100_bases TTCGAAACATTTTTCGCTTGCCGCGATGCTTCGTTCTGGCATGATGCCGGACTTGCGTGCGGCATGGCCCGGAACTCGGG ACCCTCTGTCCGGACTAAAC
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 885; Mature: 885
Protein sequence:
>885_residues MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILP ARIPNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRV VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAA PTPPIAKQELMGRNWDSGLVREMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDK IVQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQP ISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINV ILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKV VAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDA DTAET
Sequences:
>Translated_885_residues MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILP ARIPNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRV VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAA PTPPIAKQELMGRNWDSGLVREMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDK IVQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQP ISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINV ILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKV VAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDA DTAET >Mature_885_residues MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILP ARIPNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRV VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAA PTPPIAKQELMGRNWDSGLVREMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDK IVQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQP ISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINV ILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKV VAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDA DTAET
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=320, Percent_Identity=26.875, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI19913406, Length=407, Percent_Identity=27.027027027027, Blast_Score=95, Evalue=3e-19, Organism=Escherichia coli, GI1788562, Length=885, Percent_Identity=60.5649717514124, Blast_Score=1069, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=764, Percent_Identity=35.4712041884817, Blast_Score=398, Evalue=1e-112, Organism=Caenorhabditis elegans, GI17535065, Length=492, Percent_Identity=24.7967479674797, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212645657, Length=352, Percent_Identity=25.2840909090909, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI212645845, Length=189, Percent_Identity=31.2169312169312, Blast_Score=76, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115534553, Length=171, Percent_Identity=30.4093567251462, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=352, Percent_Identity=26.9886363636364, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI17136538, Length=352, Percent_Identity=24.7159090909091, Blast_Score=84, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 98147; Mature: 98147
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC RPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCEEEEEEC NIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRV CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHCCCCEE VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH VVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHH REMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDK HHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHH IVQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCHHHC ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP CCHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTR CCHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHH HGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVT CCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEEEHHHHHHHHCCCCCCEE LIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDADTAET EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC RPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCEEEEEEC NIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRV CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHCCCCEE VMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH VVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHH REMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDK HHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHH IVQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCHHHC ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRP CCHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYTR CCHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHH HGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVT CCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEEEHHHHHHHHCCCCCCEE LIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDADTAET EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677609; 8849216 [H]