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The map label for this gene is pchR [H]

Identifier: 17230117

GI number: 17230117

Start: 3135470

End: 3136513

Strand: Direct

Name: pchR [H]

Synonym: alr2625

Alternate gene names: 17230117

Gene position: 3135470-3136513 (Clockwise)

Preceding gene: 17230108

Following gene: 17230118

Centisome position: 48.89

GC content: 36.21

Gene sequence:

>1044_bases
ATGACAATCACAATTTCACAAGAAGCTTTTTGGGATTTATTTGTAGAGATACCAGAAACAGAAAAAAAGTGCGATGGGCT
AAGTCCAAGTATAGGCGATCGCTGGGATATATTTGATACCATTTGCTATTTCCCACAAGAATTAGGTCAAGGATTGTCTG
GTGGAATAGAACTACGAGATGGTTTATATTTATCTATTTCCGAACACCAATTAAATGACGATCTGGTTATAAAACTTCCT
GAGCGACAACATCCTTTAGAATACAGCTTTTATCTAGCAGGCTATTACGAAGATAATCATTTTGCTATTAGTAGCGGACA
AAATAGATTGTGGGGTAGTGGACTAGCACCAAAGGAAAAATATAAAACATTTAAATCAGAAAAAATCATTGAGATTAATG
TTCACATGGAAACGGAGCTATTTTGCCGTTTTATGGGTAAAGAAAAAAATCAGCTTCCGCAAGAATTAACTCATTTAGTC
AGAAACAATCATCAAGAATATTATTCTCGTCCTGGTACTACGACTCCAGCAATGCAAATTGCATTACAACAAATGTTAAA
TTGTCCCTACCAGGGAATGATGAAACGGATGTACTTAGAAAGTAAGGTTTTGGAACTAATGGTATTGCTGGTTGAAGAAG
ATGTATCTGCACGTCAAGGTAAGAATGATACCTCTGCACTCAAACCTGATGATGTGGAACGTATTCACCACGCCAAAGAA
ATTTTGATCCGCAATTTAGAAAATCCTCCTTCTTTAATGGAATTATCTAGACAAGTCGGCTTAAATGACTGCACTCTTAA
ACGTGGCTTCCGGCTAGTATTTGATACGACAGTATTTGGCTATTTACATCATCATAGATTAGAAGAAGCACGCAAATTGT
TAGTAGCAGGAGAAATAAACATTTCCCAAGCAGCTCGTAGAGTTGGTTTTTCTAGTCGCAGTTACTTTGCTACCGCTTTT
AGAAAAAAATTTGGCATCAATCCCAAAGAATTTTTGATAGATAATTCGCGTTTATCAATGGAACTTCATCAGTTGATAGG
ATAA

Upstream 100 bases:

>100_bases
ATTTATCACAAATACTGATCAAAGTGACTTTGCATTGAGGATTTACTAAAACATATTACTAATAATTAGCAACAAATATA
ATAATTTATTGCCACTATTT

Downstream 100 bases:

>100_bases
AGATAAGAGCAATAAATAGCTTGAGTGTTTGTATCAAAATTTGATGCATAAATTTAAAGATTTCCATGTAATCATAACCT
GATTAAACAACTTAAAAATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTITISQEAFWDLFVEIPETEKKCDGLSPSIGDRWDIFDTICYFPQELGQGLSGGIELRDGLYLSISEHQLNDDLVIKLP
ERQHPLEYSFYLAGYYEDNHFAISSGQNRLWGSGLAPKEKYKTFKSEKIIEINVHMETELFCRFMGKEKNQLPQELTHLV
RNNHQEYYSRPGTTTPAMQIALQQMLNCPYQGMMKRMYLESKVLELMVLLVEEDVSARQGKNDTSALKPDDVERIHHAKE
ILIRNLENPPSLMELSRQVGLNDCTLKRGFRLVFDTTVFGYLHHHRLEEARKLLVAGEINISQAARRVGFSSRSYFATAF
RKKFGINPKEFLIDNSRLSMELHQLIG

Sequences:

>Translated_347_residues
MTITISQEAFWDLFVEIPETEKKCDGLSPSIGDRWDIFDTICYFPQELGQGLSGGIELRDGLYLSISEHQLNDDLVIKLP
ERQHPLEYSFYLAGYYEDNHFAISSGQNRLWGSGLAPKEKYKTFKSEKIIEINVHMETELFCRFMGKEKNQLPQELTHLV
RNNHQEYYSRPGTTTPAMQIALQQMLNCPYQGMMKRMYLESKVLELMVLLVEEDVSARQGKNDTSALKPDDVERIHHAKE
ILIRNLENPPSLMELSRQVGLNDCTLKRGFRLVFDTTVFGYLHHHRLEEARKLLVAGEINISQAARRVGFSSRSYFATAF
RKKFGINPKEFLIDNSRLSMELHQLIG
>Mature_346_residues
TITISQEAFWDLFVEIPETEKKCDGLSPSIGDRWDIFDTICYFPQELGQGLSGGIELRDGLYLSISEHQLNDDLVIKLPE
RQHPLEYSFYLAGYYEDNHFAISSGQNRLWGSGLAPKEKYKTFKSEKIIEINVHMETELFCRFMGKEKNQLPQELTHLVR
NNHQEYYSRPGTTTPAMQIALQQMLNCPYQGMMKRMYLESKVLELMVLLVEEDVSARQGKNDTSALKPDDVERIHHAKEI
LIRNLENPPSLMELSRQVGLNDCTLKRGFRLVFDTTVFGYLHHHRLEEARKLLVAGEINISQAARRVGFSSRSYFATAFR
KKFGINPKEFLIDNSRLSMELHQLIG

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40099; Mature: 39968

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITISQEAFWDLFVEIPETEKKCDGLSPSIGDRWDIFDTICYFPQELGQGLSGGIELRD
CEEEECHHHHHHHHEECCCCHHHCCCCCCCCCCCHHHHHHHHHCHHHHCCCCCCCEEECC
GLYLSISEHQLNDDLVIKLPERQHPLEYSFYLAGYYEDNHFAISSGQNRLWGSGLAPKEK
CEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCHHH
YKTFKSEKIIEINVHMETELFCRFMGKEKNQLPQELTHLVRNNHQEYYSRPGTTTPAMQI
HHHHCCCEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
ALQQMLNCPYQGMMKRMYLESKVLELMVLLVEEDVSARQGKNDTSALKPDDVERIHHAKE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHH
ILIRNLENPPSLMELSRQVGLNDCTLKRGFRLVFDTTVFGYLHHHRLEEARKLLVAGEIN
HHHHCCCCCHHHHHHHHHCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
ISQAARRVGFSSRSYFATAFRKKFGINPKEFLIDNSRLSMELHQLIG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHEECCCHHHHHHHHHCC
>Mature Secondary Structure 
TITISQEAFWDLFVEIPETEKKCDGLSPSIGDRWDIFDTICYFPQELGQGLSGGIELRD
EEEECHHHHHHHHEECCCCHHHCCCCCCCCCCCHHHHHHHHHCHHHHCCCCCCCEEECC
GLYLSISEHQLNDDLVIKLPERQHPLEYSFYLAGYYEDNHFAISSGQNRLWGSGLAPKEK
CEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCHHH
YKTFKSEKIIEINVHMETELFCRFMGKEKNQLPQELTHLVRNNHQEYYSRPGTTTPAMQI
HHHHCCCEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
ALQQMLNCPYQGMMKRMYLESKVLELMVLLVEEDVSARQGKNDTSALKPDDVERIHHAKE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHH
ILIRNLENPPSLMELSRQVGLNDCTLKRGFRLVFDTTVFGYLHHHRLEEARKLLVAGEIN
HHHHCCCCCHHHHHHHHHCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
ISQAARRVGFSSRSYFATAFRKKFGINPKEFLIDNSRLSMELHQLIG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]