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The map label for this gene is 17230108

Identifier: 17230108

GI number: 17230108

Start: 3123178

End: 3123609

Strand: Direct

Name: 17230108

Synonym: alr2616

Alternate gene names: NA

Gene position: 3123178-3123609 (Clockwise)

Preceding gene: 17230107

Following gene: 17230117

Centisome position: 48.69

GC content: 36.11

Gene sequence:

>432_bases
ATGCTTCTCCATGAAACCAATGCTATATTATTCGCGCTGTTATCAGCATTTTTTGCCGCCTTGACTACCATTTTTGGCAA
GATAGGAGTAGAAGCAATTAACCCTAATTTAGCAACCGCAATCCGCACAGTTGTAATTTTATTTATGGTTTGGGGTTGGG
TTTTTGCCAAAGGACAACTAGATACACTATTGATAATTTCTCCTAAAACTCTATTATTTCTTGTATTTTCTGGGTTATCG
ACGGGTTTATCTTGGTTATTTTACTTTCGTGCTTTACAGGTAGGAAAAGCTTCTTTAGTCGCACCTTTAGATAAGTCAAG
TTTGGTGTTAGTAATTATTTTTTCAGCACTTTTTCTCAAGGAATCACTGACACCACAAATAATGATAGGAACTGGTTTAA
TTTTAGCCGGTACACTGGTTTTGATTCGTTGA

Upstream 100 bases:

>100_bases
GACACTACAAGACAAGTTGGGGGTTTCTTTATAGCTGTAGTGTGGCATCAGGATTAGTGATATTATTTATCAATAAATAC
TAAACTTTTAAAGATATTCA

Downstream 100 bases:

>100_bases
TATTGTAGTGAACCGGAAAAAGAAAATGCGGAGCAAATTAATTTTTTACACTGCTTAAATTATTCTACTGCCATTAGATA
GATAACAAGAAATTTTGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLLHETNAILFALLSAFFAALTTIFGKIGVEAINPNLATAIRTVVILFMVWGWVFAKGQLDTLLIISPKTLLFLVFSGLS
TGLSWLFYFRALQVGKASLVAPLDKSSLVLVIIFSALFLKESLTPQIMIGTGLILAGTLVLIR

Sequences:

>Translated_143_residues
MLLHETNAILFALLSAFFAALTTIFGKIGVEAINPNLATAIRTVVILFMVWGWVFAKGQLDTLLIISPKTLLFLVFSGLS
TGLSWLFYFRALQVGKASLVAPLDKSSLVLVIIFSALFLKESLTPQIMIGTGLILAGTLVLIR
>Mature_143_residues
MLLHETNAILFALLSAFFAALTTIFGKIGVEAINPNLATAIRTVVILFMVWGWVFAKGQLDTLLIISPKTLLFLVFSGLS
TGLSWLFYFRALQVGKASLVAPLDKSSLVLVIIFSALFLKESLTPQIMIGTGLILAGTLVLIR

Specific function: Unknown

COG id: COG2510

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 15512; Mature: 15512

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHETNAILFALLSAFFAALTTIFGKIGVEAINPNLATAIRTVVILFMVWGWVFAKGQL
CCEECHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
DTLLIISPKTLLFLVFSGLSTGLSWLFYFRALQVGKASLVAPLDKSSLVLVIIFSALFLK
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHH
ESLTPQIMIGTGLILAGTLVLIR
HCCCCEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MLLHETNAILFALLSAFFAALTTIFGKIGVEAINPNLATAIRTVVILFMVWGWVFAKGQL
CCEECHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
DTLLIISPKTLLFLVFSGLSTGLSWLFYFRALQVGKASLVAPLDKSSLVLVIIFSALFLK
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHH
ESLTPQIMIGTGLILAGTLVLIR
HCCCCEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655697 [H]