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The map label for this gene is pchR [H]

Identifier: 17230083

GI number: 17230083

Start: 3098738

End: 3099724

Strand: Direct

Name: pchR [H]

Synonym: alr2591

Alternate gene names: 17230083

Gene position: 3098738-3099724 (Clockwise)

Preceding gene: 17230082

Following gene: 17230084

Centisome position: 48.31

GC content: 35.56

Gene sequence:

>987_bases
ATGGTACTCATCCTTCAGGAATCAGCAGATTGTTATCAACCATTGACAGAAAATAACAACACTCCACAATCAACTATCTG
GGAAGCTCATATACATGATCCGCAAGGTATGAGTCATGGTTATAGACAATGGTTTCATTTGCGCCCAGGAATATCTCTGC
TCACTGATTGTTATCAGTTAAATGATGATTTAGTTGTGGAGAAAGCACCTAGCCCTGCTTTAATTTGGTTAGAGTTAAGT
TTTAATATCTTTGGTCATAACATCTGTGAAGGTGTCTACCCAGGAGAAAATTTCTTAGATGTATATCGAGGATTAGAACC
AGCAAATCATACTGAATGGCAAGCACAGGAAAAAGTTTTAAAATTTGATATTCACCTTGAATATTCAGAACTTCAAAGAT
TATTTGCTCATCAAATGGATTTATTGCCAGCTAGCTTTAGACGAATGTTTGAAAAAAATGATGATGAGCCTGAGTATCGG
AATTTTGGCATTACCACCCATGAAATGCAAATTGTGTTACGTCAGATTTTAAATTGTCCCTATCAAGGTTTGACAAAACA
ACTTTATTTGGAAGGCAAAATATTAGAATTATTAGCTTTACGGTTGGAATATCTACAAGAAAATCCTACTAATATCAATA
CAGACAATACTCTTAAAAATCATCAAGTTGATGGTATTTACCATGCTAGAGATATTTTAATTAAAAATCTCAATAACCCA
CCTTCATTAATAGATTTGGCGAGGCTGGTGGGATTAAATGATTGCACACTAAAAAAGGGGTTTCAAGAGGTGTTTGGGAC
TACAGCCTTTGGATATTTACATGAATATCGTATGGAACAGGCGAAAGAATTACTCTTAGAAAAAGAAATGAATGTGACTC
AAGTAGCCCAAGTGGTTGGTTATGAAGCGCGTACTTCTTTTATCAGGGCTTTCCGTAAAAAGTTCGGTGTGAGTCCTACT
GCTTATATCCAAAGAAATTCCGCTTAG

Upstream 100 bases:

>100_bases
ATATCTGCTCCTTTGGAATTGCAGAAACTAACAAACTAATGATAAGATTTATCATCTATTTTGATTTTCTCCACTTATCT
GTGTAGATAATTTCAAACCA

Downstream 100 bases:

>100_bases
GTAACAATAAATTCCGTTGATGTCACACTTAGAGCTTTAACTCTCCATTTAATTGCAGTAAGATTCTCGCTAAGAATTAC
TAATAACAGAAGCAAGTCTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVLILQESADCYQPLTENNNTPQSTIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDCYQLNDDLVVEKAPSPALIWLELS
FNIFGHNICEGVYPGENFLDVYRGLEPANHTEWQAQEKVLKFDIHLEYSELQRLFAHQMDLLPASFRRMFEKNDDEPEYR
NFGITTHEMQIVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPTNINTDNTLKNHQVDGIYHARDILIKNLNNP
PSLIDLARLVGLNDCTLKKGFQEVFGTTAFGYLHEYRMEQAKELLLEKEMNVTQVAQVVGYEARTSFIRAFRKKFGVSPT
AYIQRNSA

Sequences:

>Translated_328_residues
MVLILQESADCYQPLTENNNTPQSTIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDCYQLNDDLVVEKAPSPALIWLELS
FNIFGHNICEGVYPGENFLDVYRGLEPANHTEWQAQEKVLKFDIHLEYSELQRLFAHQMDLLPASFRRMFEKNDDEPEYR
NFGITTHEMQIVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPTNINTDNTLKNHQVDGIYHARDILIKNLNNP
PSLIDLARLVGLNDCTLKKGFQEVFGTTAFGYLHEYRMEQAKELLLEKEMNVTQVAQVVGYEARTSFIRAFRKKFGVSPT
AYIQRNSA
>Mature_328_residues
MVLILQESADCYQPLTENNNTPQSTIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDCYQLNDDLVVEKAPSPALIWLELS
FNIFGHNICEGVYPGENFLDVYRGLEPANHTEWQAQEKVLKFDIHLEYSELQRLFAHQMDLLPASFRRMFEKNDDEPEYR
NFGITTHEMQIVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPTNINTDNTLKNHQVDGIYHARDILIKNLNNP
PSLIDLARLVGLNDCTLKKGFQEVFGTTAFGYLHEYRMEQAKELLLEKEMNVTQVAQVVGYEARTSFIRAFRKKFGVSPT
AYIQRNSA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38065; Mature: 38065

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLILQESADCYQPLTENNNTPQSTIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDCYQL
CEEEEECCCHHHCCHHCCCCCCCHHEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
NDDLVVEKAPSPALIWLELSFNIFGHNICEGVYPGENFLDVYRGLEPANHTEWQAQEKVL
CCCEEEECCCCCEEEEEEEEECHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
KFDIHLEYSELQRLFAHQMDLLPASFRRMFEKNDDEPEYRNFGITTHEMQIVLRQILNCP
HEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHCCC
YQGLTKQLYLEGKILELLALRLEYLQENPTNINTDNTLKNHQVDGIYHARDILIKNLNNP
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PSLIDLARLVGLNDCTLKKGFQEVFGTTAFGYLHEYRMEQAKELLLEKEMNVTQVAQVVG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
YEARTSFIRAFRKKFGVSPTAYIQRNSA
HHHHHHHHHHHHHHHCCCCHHEEECCCC
>Mature Secondary Structure
MVLILQESADCYQPLTENNNTPQSTIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDCYQL
CEEEEECCCHHHCCHHCCCCCCCHHEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
NDDLVVEKAPSPALIWLELSFNIFGHNICEGVYPGENFLDVYRGLEPANHTEWQAQEKVL
CCCEEEECCCCCEEEEEEEEECHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
KFDIHLEYSELQRLFAHQMDLLPASFRRMFEKNDDEPEYRNFGITTHEMQIVLRQILNCP
HEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHCCC
YQGLTKQLYLEGKILELLALRLEYLQENPTNINTDNTLKNHQVDGIYHARDILIKNLNNP
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PSLIDLARLVGLNDCTLKKGFQEVFGTTAFGYLHEYRMEQAKELLLEKEMNVTQVAQVVG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
YEARTSFIRAFRKKFGVSPTAYIQRNSA
HHHHHHHHHHHHHHHCCCCHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]