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The map label for this gene is yfmC [H]

Identifier: 17230082

GI number: 17230082

Start: 3097495

End: 3098487

Strand: Direct

Name: yfmC [H]

Synonym: alr2590

Alternate gene names: 17230082

Gene position: 3097495-3098487 (Clockwise)

Preceding gene: 17230081

Following gene: 17230083

Centisome position: 48.29

GC content: 39.27

Gene sequence:

>993_bases
ATGAAGACTTGGTTTAAGTATATAAAATTATTGCTGCTATCAGTTTGTACTTTTTTGTTAGTGACAGGCTGTAACAGTAA
CGTATCAAAATTACCAAGTAATCAGACTACCAGCAATATAACTACAAATTGCCGTGTAATTAATCATGAAGCAGGTAAAA
CGCAGATCTGCGGACAACCTAAAAAAGTTGTTGCTCTGAGTCCGCCTGTGTTAGATATGATGCTTGCTTTGGGTGTGCAA
CCTGCGGGTTATGCGGAAGTAGACTTGCTCAACAGTAAAGTATTTGATCGACCTAAAGAGCAAATTCCCTACCTTGGCGA
TCGCATTACCAGTCAACCGATGAATGTAGGCGATCGCGGTAATCCTTCTTTAGAAAGTTTACTGCAACTGAAGCCAGATT
TGATTTTAGGTGAAGCATCTTATAACGAAACTGAATACCAAATCTTAAACAAAATTGCACCGACAATTTTAATAAGTCAT
CGAGATGGTATCACTCCAGCTTGGCAACAAACAATCTCAATTATTGCCCAAGCTTTAGGACGAGAAGATAAAGTACCAAC
CGTCATAGCAGAGTATGAACAGAAATTATCCCAAGCCAAAACTGCGATCGCTCCTATTGCTCAACACCAGGAACTATTGC
TGTTAGCATTTAGGGGAATTACTCTAACCTCATTTACCTTTGGAGCAGAAACCTTTGCTGGCGGACTATTACAAGATTTA
GGATTTAAGCTTGTTAGTCCTGAATCCACAGAATATGAAGTGGCGTTGGAAGTATTACCTAAATTTAAGTCCGACTTAAT
TGTGATTATGCCTTCAGGAAATAACAATATAGAAAACGCCAAGCGTCAATGGAGTCAAAATCCGATTTTACAGTCTATAT
CTGCTCACAATACAAATCGAATTTACTTCATTGATTACCAACTAGCAAGCCGCATTCGCGGGCCGATCGCTGCTGAGTTG
TTTGTTAATCAAGTTCGTCAATTGCTGTCTTGA

Upstream 100 bases:

>100_bases
AGATGAGAGTAAATCTATATATTTAATTGGGGATTGTCATGGGATTGAGCCAGAACTGATTCCTAAATACTCTGTGAATA
ATCTTATACAAATTATCTAA

Downstream 100 bases:

>100_bases
TATAGGACTCATCTTTGATTTCTGAAAAACCAAATTGGCTAGAAGCTTGCTATACAGAGCTTTGTTTCTCAGTATACGTA
GCAAAATTCAAGTACGATTC

Product: iron(III) dicitrate-binding periplasmic protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKTWFKYIKLLLLSVCTFLLVTGCNSNVSKLPSNQTTSNITTNCRVINHEAGKTQICGQPKKVVALSPPVLDMMLALGVQ
PAGYAEVDLLNSKVFDRPKEQIPYLGDRITSQPMNVGDRGNPSLESLLQLKPDLILGEASYNETEYQILNKIAPTILISH
RDGITPAWQQTISIIAQALGREDKVPTVIAEYEQKLSQAKTAIAPIAQHQELLLLAFRGITLTSFTFGAETFAGGLLQDL
GFKLVSPESTEYEVALEVLPKFKSDLIVIMPSGNNNIENAKRQWSQNPILQSISAHNTNRIYFIDYQLASRIRGPIAAEL
FVNQVRQLLS

Sequences:

>Translated_330_residues
MKTWFKYIKLLLLSVCTFLLVTGCNSNVSKLPSNQTTSNITTNCRVINHEAGKTQICGQPKKVVALSPPVLDMMLALGVQ
PAGYAEVDLLNSKVFDRPKEQIPYLGDRITSQPMNVGDRGNPSLESLLQLKPDLILGEASYNETEYQILNKIAPTILISH
RDGITPAWQQTISIIAQALGREDKVPTVIAEYEQKLSQAKTAIAPIAQHQELLLLAFRGITLTSFTFGAETFAGGLLQDL
GFKLVSPESTEYEVALEVLPKFKSDLIVIMPSGNNNIENAKRQWSQNPILQSISAHNTNRIYFIDYQLASRIRGPIAAEL
FVNQVRQLLS
>Mature_330_residues
MKTWFKYIKLLLLSVCTFLLVTGCNSNVSKLPSNQTTSNITTNCRVINHEAGKTQICGQPKKVVALSPPVLDMMLALGVQ
PAGYAEVDLLNSKVFDRPKEQIPYLGDRITSQPMNVGDRGNPSLESLLQLKPDLILGEASYNETEYQILNKIAPTILISH
RDGITPAWQQTISIIAQALGREDKVPTVIAEYEQKLSQAKTAIAPIAQHQELLLLAFRGITLTSFTFGAETFAGGLLQDL
GFKLVSPESTEYEVALEVLPKFKSDLIVIMPSGNNNIENAKRQWSQNPILQSISAHNTNRIYFIDYQLASRIRGPIAAEL
FVNQVRQLLS

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=281, Percent_Identity=25.2669039145907, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36523; Mature: 36523

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTWFKYIKLLLLSVCTFLLVTGCNSNVSKLPSNQTTSNITTNCRVINHEAGKTQICGQP
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEECEEEEECCCCCCCCCCCC
KKVVALSPPVLDMMLALGVQPAGYAEVDLLNSKVFDRPKEQIPYLGDRITSQPMNVGDRG
CEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCC
NPSLESLLQLKPDLILGEASYNETEYQILNKIAPTILISHRDGITPAWQQTISIIAQALG
CHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHC
REDKVPTVIAEYEQKLSQAKTAIAPIAQHQELLLLAFRGITLTSFTFGAETFAGGLLQDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC
GFKLVSPESTEYEVALEVLPKFKSDLIVIMPSGNNNIENAKRQWSQNPILQSISAHNTNR
CCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCE
IYFIDYQLASRIRGPIAAELFVNQVRQLLS
EEEEEHHHHHHHCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKTWFKYIKLLLLSVCTFLLVTGCNSNVSKLPSNQTTSNITTNCRVINHEAGKTQICGQP
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEECEEEEECCCCCCCCCCCC
KKVVALSPPVLDMMLALGVQPAGYAEVDLLNSKVFDRPKEQIPYLGDRITSQPMNVGDRG
CEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCC
NPSLESLLQLKPDLILGEASYNETEYQILNKIAPTILISHRDGITPAWQQTISIIAQALG
CHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHC
REDKVPTVIAEYEQKLSQAKTAIAPIAQHQELLLLAFRGITLTSFTFGAETFAGGLLQDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC
GFKLVSPESTEYEVALEVLPKFKSDLIVIMPSGNNNIENAKRQWSQNPILQSISAHNTNR
CCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCE
IYFIDYQLASRIRGPIAAELFVNQVRQLLS
EEEEEHHHHHHHCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]