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The map label for this gene is ycf16 [C]

Identifier: 17229985

GI number: 17229985

Start: 2993211

End: 2993999

Strand: Direct

Name: ycf16 [C]

Synonym: alr2493

Alternate gene names: 17229985

Gene position: 2993211-2993999 (Clockwise)

Preceding gene: 17229984

Following gene: 17229986

Centisome position: 46.67

GC content: 45.5

Gene sequence:

>789_bases
ATGATTATTGAAAATAGTGAAGTTGTTTTGTCGGTAAGGGGTTTGACGGCTGAGGTTGATGGTACGCCAATTCTCAAGGG
TGTGAATCTTGAGGTGCGTTCTGGTGAAGTTCATGCAATTATGGGGCCGAATGGTTCTGGTAAGAGTACTTTGTCTAAGG
TGTTGGCGGGACATCCTGCTTATACGGTGACTGGTGGTGAGGTAGTTTTTCAGGGACAGAATTTGCTGGAGTTGGAACCG
GAGGAACGGGCGCGGACTGGTGTGTTTTTGGCGTTCCAATATCCTTTGGAAATCCCTGGGGTGAGTAATTTGGATTTCTT
GCGGGTGGCTTATAATTCTCGTCGCAAAGCCCAAGGGTTGGAGGAAATTGATACCTTTGATTTTGATGATTTGATTGAGG
AAAGGCTGGAAGTGGTAAAGATGAATCCGGCTTTCCTGAATCGGAGTGTGAATGAAGGGTTTTCTGGTGGTGAGAAGAAG
CGCAATGAGATTCTGCAAATGGCGCTACTGGAACCGAAGTTGGCAATTTTGGATGAGACTGATTCTGGTTTAGATATTGA
TGCACTGAAAATTGTGGCTCATGGTGTGAATCAACTCGCTAGTCCGGAAAATGCGACGATTTTGATTACTCACTATCAAC
GGTTGCTTGATTATATTGTGCCGGATTTTGTTCATGTGATGGCACGGGGGCAGATAATTACTAGTGGTGGTAAGGAATTG
GCACTAGAGTTAGAGTCTCGTGGTTATGACTGGCTGCTAGAAGATGCTGCTGTTGAGGTGGGTGTGTAA

Upstream 100 bases:

>100_bases
GAAGGTAGTGTGGGTTAGGGTTTTTAACGCAGAGGGGCGCTGAGGTTGGCGCTGAGGTACGCGGAGAAGAGAAGAGAAGA
GAAGAGAGAAGAGAGAGAAG

Downstream 100 bases:

>100_bases
TGACGATGCAAGTTTCTCCTAGTGCAATTGCTAACTCAGATGCGGTGAGTTTGACATCGAGTTTGTTGGATAGAGATAGT
TATTTGGTTAGTTTGTTGAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIIENSEVVLSVRGLTAEVDGTPILKGVNLEVRSGEVHAIMGPNGSGKSTLSKVLAGHPAYTVTGGEVVFQGQNLLELEP
EERARTGVFLAFQYPLEIPGVSNLDFLRVAYNSRRKAQGLEEIDTFDFDDLIEERLEVVKMNPAFLNRSVNEGFSGGEKK
RNEILQMALLEPKLAILDETDSGLDIDALKIVAHGVNQLASPENATILITHYQRLLDYIVPDFVHVMARGQIITSGGKEL
ALELESRGYDWLLEDAAVEVGV

Sequences:

>Translated_262_residues
MIIENSEVVLSVRGLTAEVDGTPILKGVNLEVRSGEVHAIMGPNGSGKSTLSKVLAGHPAYTVTGGEVVFQGQNLLELEP
EERARTGVFLAFQYPLEIPGVSNLDFLRVAYNSRRKAQGLEEIDTFDFDDLIEERLEVVKMNPAFLNRSVNEGFSGGEKK
RNEILQMALLEPKLAILDETDSGLDIDALKIVAHGVNQLASPENATILITHYQRLLDYIVPDFVHVMARGQIITSGGKEL
ALELESRGYDWLLEDAAVEVGV
>Mature_262_residues
MIIENSEVVLSVRGLTAEVDGTPILKGVNLEVRSGEVHAIMGPNGSGKSTLSKVLAGHPAYTVTGGEVVFQGQNLLELEP
EERARTGVFLAFQYPLEIPGVSNLDFLRVAYNSRRKAQGLEEIDTFDFDDLIEERLEVVKMNPAFLNRSVNEGFSGGEKK
RNEILQMALLEPKLAILDETDSGLDIDALKIVAHGVNQLASPENATILITHYQRLLDYIVPDFVHVMARGQIITSGGKEL
ALELESRGYDWLLEDAAVEVGV

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=246, Percent_Identity=59.7560975609756, Blast_Score=302, Evalue=2e-83,
Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=27.7551020408163, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=25.3275109170306, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=27.027027027027, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787758, Length=244, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786698, Length=189, Percent_Identity=30.6878306878307, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=26.8867924528302, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=236, Percent_Identity=25.4237288135593, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=28.3842794759825, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786654, Length=251, Percent_Identity=27.4900398406374, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=24.1228070175439, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082267, Length=177, Percent_Identity=28.2485875706215, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=25.8771929824561, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI48995001, Length=244, Percent_Identity=25.4098360655738, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=29.0322580645161, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787712, Length=188, Percent_Identity=28.1914893617021, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=258, Percent_Identity=29.8449612403101, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=221, Percent_Identity=28.9592760180996, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=30.0847457627119, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24653245, Length=227, Percent_Identity=28.1938325991189, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281363262, Length=227, Percent_Identity=28.1938325991189, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI161076682, Length=258, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076684, Length=258, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581617, Length=258, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581615, Length=258, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28699; Mature: 28699

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIENSEVVLSVRGLTAEVDGTPILKGVNLEVRSGEVHAIMGPNGSGKSTLSKVLAGHPA
CEECCCEEEEEEECEEEECCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
YTVTGGEVVFQGQNLLELEPEERARTGVFLAFQYPLEIPGVSNLDFLRVAYNSRRKAQGL
EEEECCEEEECCCCEEEECCHHHHCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHCCH
EEIDTFDFDDLIEERLEVVKMNPAFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDET
HHHCCCCHHHHHHHHHHHEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
DSGLDIDALKIVAHGVNQLASPENATILITHYQRLLDYIVPDFVHVMARGQIITSGGKEL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCCCEE
ALELESRGYDWLLEDAAVEVGV
EEEECCCCCCEEEECCEEECCC
>Mature Secondary Structure
MIIENSEVVLSVRGLTAEVDGTPILKGVNLEVRSGEVHAIMGPNGSGKSTLSKVLAGHPA
CEECCCEEEEEEECEEEECCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
YTVTGGEVVFQGQNLLELEPEERARTGVFLAFQYPLEIPGVSNLDFLRVAYNSRRKAQGL
EEEECCEEEECCCCEEEECCHHHHCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHCCH
EEIDTFDFDDLIEERLEVVKMNPAFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDET
HHHCCCCHHHHHHHHHHHEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
DSGLDIDALKIVAHGVNQLASPENATILITHYQRLLDYIVPDFVHVMARGQIITSGGKEL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCCCEE
ALELESRGYDWLLEDAAVEVGV
EEEECCCCCCEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]