Click here to switch to the map view.

The map label for this gene is rsmE [H]

Identifier: 17228844

GI number: 17228844

Start: 1603423

End: 1604130

Strand: Direct

Name: rsmE [H]

Synonym: alr1349

Alternate gene names: 17228844

Gene position: 1603423-1604130 (Clockwise)

Preceding gene: 17228843

Following gene: 17228845

Centisome position: 25.0

GC content: 45.34

Gene sequence:

>708_bases
ATGAGCCAATTACAACGAATTACGATCGCACCTTCTCAACTCCAACAAGAACAAGTTCTACTGACAACCCAACAAAAACA
TTACTTAAAACGGGTGTTGCGGTTGCGTGAGGGCGATCGCTTTATTGTGATGGATGGACTGGGTAAGTGGTGGTTGGCTA
ACCTCACGGAGGAACAAGCCCAGGTATTAGAAGAATTAGCCGTAAAAACAGAATTACCTGTAGCAATTACGCTGATGATT
GCTTTGCCTAAGGGTAGTGGATTTGATGAAGTTGTGCGGAGTTGTACGGAGTTAGGAGTAGCTTGTATAGCTCCAGTGTT
GAGCGATCGCACTTTACTAAATCCCAGTACCCAAAAGCTAGAACGTTGGCGACGTATAGCCAGCGAAGCCGCAGAGCAAT
CGGAGCGTGCTTTTGTACCGACGATTTTAGAGCCTCTAACTTTTAGTGACGCTGTTAATAATATTACAGCCGTTCATCGT
TATATTTGTGAAGCCCGTGGTGAGTATGTCCATCTGAAAAACGTTCTCACAGACATATCTGGGGGAGTTGTAGTGGCAAT
TGGCCCAGAGGGAGGATGGACAGATAGAGAATTAGAGGAAGCTACTACACTTAGGTTTCAACCAGTATCCTTAGGGGGGA
GAATCTTACGTGCAGTTACAGCCCCACTTGTAGCATTATCCTTAATTAGCGCAGCTTGTGAAGGATGA

Upstream 100 bases:

>100_bases
TAGAGGCTTACTTCCAAAGCCTTTCTTGAAGAAGGGGTCAAATACAGACCTAACCCCCAGCCCCTTCCCTTGTAGGGAAG
GGGAGTAAGAATAAAATTTC

Downstream 100 bases:

>100_bases
ATTTAGATTTTTTAGGTATTGAAATTCTTTTCTCCCCTTACTCCCCCATCTCCCCCTGCTTCCCCAAGTCTCTTTTTTGG
GAAACATATTAATAGCGTGC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQAQVLEELAVKTELPVAITLMI
ALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQKLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHR
YICEARGEYVHLKNVLTDISGGVVVAIGPEGGWTDRELEEATTLRFQPVSLGGRILRAVTAPLVALSLISAACEG

Sequences:

>Translated_235_residues
MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQAQVLEELAVKTELPVAITLMI
ALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQKLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHR
YICEARGEYVHLKNVLTDISGGVVVAIGPEGGWTDRELEEATTLRFQPVSLGGRILRAVTAPLVALSLISAACEG
>Mature_234_residues
SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQAQVLEELAVKTELPVAITLMIA
LPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQKLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRY
ICEARGEYVHLKNVLTDISGGVVVAIGPEGGWTDRELEEATTLRFQPVSLGGRILRAVTAPLVALSLISAACEG

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25927; Mature: 25796

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQA
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCHHHH
QVLEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQKL
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYICEARGEYVHLKNVLTDIS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCC
GGVVVAIGPEGGWTDRELEEATTLRFQPVSLGGRILRAVTAPLVALSLISAACEG
CCEEEEECCCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQA
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCHHHH
QVLEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQKL
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYICEARGEYVHLKNVLTDIS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCC
GGVVVAIGPEGGWTDRELEEATTLRFQPVSLGGRILRAVTAPLVALSLISAACEG
CCEEEEECCCCCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]